PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40301-40350 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.1624 | 7 | 2 | 8 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6198 | 99.6956 | 99.5441 | 80.5441 | 655 | 2 | 655 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.7500 | 12 | 2 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.0606 | 13 | 2 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.1194 | 13 | 2 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8095 | 97.6471 | 100.0000 | 89.8904 | 83 | 2 | 83 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 83.0189 | 95.6522 | 73.3333 | 97.9784 | 44 | 2 | 44 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 77.5000 | 93.9394 | 65.9574 | 98.0964 | 31 | 2 | 31 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 85.1562 | 98.1982 | 75.1724 | 96.7963 | 109 | 2 | 109 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 86.2319 | 98.3471 | 76.7742 | 96.9560 | 119 | 2 | 119 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 86.3309 | 98.3607 | 76.9231 | 97.0115 | 120 | 2 | 120 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5663 | 99.6528 | 99.4801 | 69.4386 | 574 | 2 | 574 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2126 | 99.5485 | 98.8789 | 32.5265 | 441 | 2 | 441 | 5 | 4 | 80.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.6170 | 91.6667 | 95.6522 | 76.7677 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 87.2180 | 96.6667 | 79.4521 | 92.0131 | 58 | 2 | 58 | 15 | 2 | 13.3333 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 90.0000 | 95.7447 | 84.9057 | 94.0382 | 45 | 2 | 45 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 84.2105 | 17 | 2 | 17 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 85.9375 | 17 | 2 | 17 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 93.4211 | 97.2603 | 89.8734 | 93.5668 | 71 | 2 | 71 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 94.1176 | 97.5610 | 90.9091 | 93.6462 | 80 | 2 | 80 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 82.3529 | 77.7778 | 87.5000 | 91.7526 | 7 | 2 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_siren | homalt | 98.0843 | 98.4615 | 97.7099 | 81.5752 | 128 | 2 | 128 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | D6_15 | segdup | het | 90.9091 | 97.8261 | 84.9057 | 96.1483 | 90 | 2 | 90 | 16 | 2 | 12.5000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.7644 | 99.0244 | 89.0351 | 90.6863 | 203 | 2 | 203 | 25 | 23 | 92.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.8967 | 92.5926 | 95.2381 | 91.1392 | 25 | 2 | 20 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5839 | 99.4460 | 99.7222 | 61.9048 | 359 | 2 | 359 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6236 | 99.4987 | 99.7487 | 63.6197 | 397 | 2 | 397 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.2659 | 97.7011 | 98.8372 | 82.5911 | 85 | 2 | 85 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.0273 | 96.1538 | 97.9167 | 85.1852 | 50 | 2 | 47 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7261 | 98.7261 | 98.7261 | 63.8249 | 155 | 2 | 155 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 22.7273 | 49 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 88.4615 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 85.2459 | 92.8571 | 78.7879 | 95.5041 | 26 | 2 | 26 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 94.6776 | 44 | 2 | 43 | 9 | 3 | 33.3333 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.0766 | 95.8333 | 81.4815 | 95.2590 | 46 | 2 | 44 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 88.7476 | 96.0784 | 82.4561 | 95.1199 | 49 | 2 | 47 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | homalt | 90.1408 | 94.1176 | 86.4865 | 92.8295 | 32 | 2 | 32 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.9541 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.0233 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | HG002compoundhet | homalt | 89.0601 | 99.3127 | 80.7263 | 78.1840 | 289 | 2 | 289 | 69 | 69 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6109 | 99.2248 | 100.0000 | 61.7910 | 256 | 2 | 256 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9848 | 98.9848 | 98.9848 | 56.8928 | 195 | 2 | 195 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7831 | 99.5671 | 100.0000 | 29.5559 | 460 | 2 | 460 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.1176 | 12 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.4269 | 99.4269 | 99.4269 | 83.7068 | 347 | 2 | 347 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4505 | 99.4505 | 99.4505 | 84.6219 | 362 | 2 | 362 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4624 | 99.4624 | 99.4624 | 84.6217 | 370 | 2 | 370 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4608 | 99.3080 | 95.6811 | 91.3754 | 287 | 2 | 288 | 13 | 1 | 7.6923 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m0_e0 | het | 96.6323 | 99.0099 | 94.3662 | 91.7951 | 200 | 2 | 201 | 12 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 86.2424 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |