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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 802 803 804 805 806 807 808 809 810 ... 1720 1721 » 40251-40300 / 86044 show all
hfeng-pmm1	SNP	*	tech_badpromoters	het	98.6842	97.4026	100.0000	42.7481	75	2	75	0	0
hfeng-pmm1	SNP	ti	*	hetalt	99.5708	99.6564	99.4854	47.7130	580	2	580	3	3	100.0000
hfeng-pmm1	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	38.6228	205	2	205	0	0
hfeng-pmm1	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.5503	577	2	577	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.0516	381	2	381	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.9407	99.8815	100.0000	65.2514	1686	2	1686	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.4084	2199	2	2199	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0588	94.2857	100.0000	93.2099	33	2	33	0	0
hfeng-pmm1	SNP	tv	*	hetalt	99.7131	99.7704	99.6560	48.7962	869	2	869	3	3	100.0000
hfeng-pmm1	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	39.1304	308	2	308	0	0
hfeng-pmm1	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
hfeng-pmm1	SNP	tv	func_cds	*	99.9314	99.9542	99.9085	27.9499	4369	2	4368	4	0	0.0000
hfeng-pmm1	SNP	tv	func_cds	het	99.8871	99.9247	99.8495	28.9115	2655	2	2654	4	0	0.0000
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	97.5000	95.1220	100.0000	91.9255	39	2	39	0	0
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	homalt	87.5000	77.7778	100.0000	95.7831	7	2	7	0	0
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	37.0751	2756	2	2756	2	2	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9237	99.8474	100.0000	35.1338	1309	2	1309	0	0
hfeng-pmm1	SNP	tv	map_l250_m1_e0	homalt	99.4179	99.7664	99.0719	87.2031	854	2	854	8	4	50.0000
hfeng-pmm1	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	90.2264	3236	2	3236	6	6	100.0000
hfeng-pmm2	INDEL	*	func_cds	het	99.0697	99.0654	99.0741	49.1765	212	2	214	2	0	0.0000
hfeng-pmm2	INDEL	*	map_l100_m0_e0	hetalt	96.8750	93.9394	100.0000	91.4667	31	2	32	0	0
hfeng-pmm2	INDEL	*	map_l125_m0_e0	homalt	98.7741	99.2958	98.2578	86.8469	282	2	282	5	4	80.0000
hfeng-pmm2	INDEL	*	map_l150_m2_e1	hetalt	95.4545	91.3043	100.0000	95.5414	21	2	21	0	0
hfeng-pmm2	INDEL	*	map_l250_m0_e0	het	88.6957	96.2264	82.2581	97.7139	51	2	51	11	1	9.0909
hfeng-pmm2	INDEL	*	map_l250_m1_e0	homalt	98.1651	98.1651	98.1651	94.2144	107	2	107	2	2	100.0000
hfeng-pmm2	INDEL	*	map_l250_m2_e0	homalt	98.2609	98.2609	98.2609	94.7513	113	2	113	2	2	100.0000
hfeng-pmm2	INDEL	*	map_l250_m2_e1	homalt	98.2759	98.2759	98.2759	94.8444	114	2	114	2	2	100.0000
hfeng-pmm2	INDEL	*	segdup	homalt	99.6360	99.7917	99.4808	93.2596	958	2	958	5	4	80.0000
hfeng-pmm3	SNP	tv	map_l250_m0_e0	homalt	98.2005	98.9637	97.4490	93.5569	191	2	191	5	3	60.0000
hfeng-pmm3	SNP	tv	segdup	homalt	99.8920	99.9382	99.8457	90.1933	3236	2	3236	5	5	100.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5772	99.8940	99.2624	72.0923	1884	2	1884	14	11	78.5714
jlack-gatk	INDEL	*	map_l150_m0_e0	homalt	98.7805	98.7805	98.7805	90.9542	162	2	162	2	2	100.0000
jlack-gatk	INDEL	*	map_l150_m1_e0	hetalt	92.6829	90.4762	95.0000	95.2830	19	2	19	1	0	0.0000
jlack-gatk	INDEL	*	map_l150_m2_e0	hetalt	92.6829	90.4762	95.0000	95.8506	19	2	19	1	0	0.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.0000	81.8182	100.0000	85.5422	9	2	12	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	94.4444	89.4737	100.0000	72.3684	17	2	21	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.5212	99.2593	97.7941	64.3045	268	2	266	6	3	50.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	90.9091	83.3333	100.0000	42.8571	10	2	12	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.0000	96.0784	100.0000	24.6377	49	2	52	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	70.5882	75.0000	66.6667	89.4737	6	2	4	2	2	100.0000
jlack-gatk	INDEL	D16_PLUS	map_l100_m1_e0	homalt	78.7879	86.6667	72.2222	94.9861	13	2	13	5	2	40.0000
jlack-gatk	INDEL	D16_PLUS	map_l100_m2_e0	homalt	80.0000	87.5000	73.6842	95.5916	14	2	14	5	2	40.0000
jlack-gatk	INDEL	D16_PLUS	map_l100_m2_e1	homalt	80.0000	87.5000	73.6842	95.6221	14	2	14	5	2	40.0000
jlack-gatk	INDEL	D16_PLUS	map_l125_m1_e0	*	89.2857	92.5926	86.2069	97.0010	25	2	25	4	1	25.0000
jlack-gatk	INDEL	D16_PLUS	map_l125_m2_e0	*	87.7193	92.5926	83.3333	97.3545	25	2	25	5	1	20.0000
jlack-gatk	INDEL	D16_PLUS	map_l125_m2_e1	hetalt	57.1429	50.0000	66.6667	92.5000	2	2	2	1	0	0.0000
jlack-gatk	INDEL	D16_PLUS	map_l150_m2_e1	*	84.2105	88.8889	80.0000	97.5124	16	2	16	4	1	25.0000
jlack-gatk	INDEL	D16_PLUS	map_l150_m2_e1	hetalt		0.0000	0.0000	96.6667	0	2	0	1	0	0.0000
jlack-gatk	INDEL	D16_PLUS	map_siren	homalt	91.4286	94.1176	88.8889	93.7716	32	2	32	4	1	25.0000
jlack-gatk	INDEL	D16_PLUS	segdup	*	96.5517	96.5517	96.5517	97.0272	56	2	56	2	1	50.0000

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