PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39951-40000 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.6552 | 81.2500 | 100.0000 | 97.7816 | 13 | 3 | 13 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.3529 | 70.0000 | 100.0000 | 98.2544 | 7 | 3 | 7 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | HG002complexvar | hetalt | 99.5138 | 99.0323 | 100.0000 | 35.3684 | 307 | 3 | 307 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.0833 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 84.8485 | 82.3529 | 87.5000 | 99.9550 | 14 | 3 | 14 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 89.6552 | 81.2500 | 100.0000 | 99.8895 | 13 | 3 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7596 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 95.1963 | 112 | 3 | 112 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 95.3036 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 84.2105 | 72.7273 | 100.0000 | 78.5714 | 8 | 3 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.4286 | 84.2105 | 100.0000 | 62.7451 | 16 | 3 | 19 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3915 | 99.3915 | 99.3915 | 54.5622 | 490 | 3 | 490 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.7015 | 62.5000 | 57.1429 | 82.5000 | 5 | 3 | 4 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 92.5926 | 89.2857 | 96.1538 | 93.2468 | 25 | 3 | 25 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | homalt | 93.9394 | 91.1765 | 96.8750 | 88.8889 | 31 | 3 | 31 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | segdup | * | 94.8276 | 94.8276 | 94.8276 | 93.6819 | 55 | 3 | 55 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.4783 | 6 | 3 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | HG002compoundhet | homalt | 93.1153 | 98.9691 | 87.9154 | 78.3801 | 288 | 3 | 291 | 40 | 38 | 95.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6711 | 99.6711 | 99.6711 | 66.8845 | 909 | 3 | 909 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4924 | 99.3915 | 99.5935 | 55.2320 | 490 | 3 | 490 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0696 | 98.8889 | 99.2509 | 60.6195 | 267 | 3 | 265 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 95.7529 | 97.6378 | 93.9394 | 49.0347 | 124 | 3 | 124 | 8 | 7 | 87.5000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 43.9024 | 22 | 3 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 81.4136 | 71 | 3 | 71 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5773 | 99.4932 | 99.6616 | 80.9170 | 589 | 3 | 589 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5905 | 99.5090 | 99.6721 | 81.7529 | 608 | 3 | 608 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5964 | 99.5161 | 99.6769 | 81.8369 | 617 | 3 | 617 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 63.9535 | 30 | 3 | 31 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 91.3043 | 87.5000 | 95.4545 | 74.4186 | 21 | 3 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | * | 96.6184 | 97.0874 | 96.1538 | 88.7931 | 100 | 3 | 100 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 97.6000 | 95.3125 | 100.0000 | 84.6348 | 61 | 3 | 61 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 89.0445 | 128 | 3 | 128 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 97.6378 | 95.3846 | 100.0000 | 85.3428 | 62 | 3 | 62 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0588 | 97.7778 | 96.3504 | 88.9159 | 132 | 3 | 132 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7099 | 95.5224 | 100.0000 | 85.2874 | 64 | 3 | 64 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8417 | 95.7746 | 100.0000 | 91.9048 | 68 | 3 | 68 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.8417 | 95.7746 | 100.0000 | 92.0653 | 68 | 3 | 68 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 87.6812 | 17 | 3 | 17 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6507 | 98.5366 | 94.8357 | 90.7270 | 202 | 3 | 202 | 11 | 8 | 72.7273 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 88.2463 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1501 | 98.3146 | 100.0000 | 80.6416 | 175 | 3 | 175 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6507 | 98.5366 | 94.8357 | 90.7270 | 202 | 3 | 202 | 11 | 8 | 72.7273 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.5714 | 25.0000 | 33.3333 | 89.2857 | 1 | 3 | 1 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9086 | 98.2143 | 97.6048 | 77.2169 | 165 | 3 | 163 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 75.2809 | 20 | 3 | 22 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 91.9499 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4848 | 99.7183 | 99.2523 | 67.2382 | 1062 | 3 | 1062 | 8 | 8 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.5429 | 109 | 3 | 109 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_siren | homalt | 99.6707 | 99.7525 | 99.5892 | 76.9508 | 1209 | 3 | 1212 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.2046 | 45 | 3 | 46 | 0 | 0 | ||