PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39901-39950 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 58.3333 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 84.0000 | 87.5000 | 80.7692 | 72.3404 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | het | 94.6154 | 97.6190 | 91.7910 | 88.3173 | 123 | 3 | 123 | 11 | 6 | 54.5455 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | het | 94.8148 | 97.7099 | 92.0863 | 88.5691 | 128 | 3 | 128 | 11 | 6 | 54.5455 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e1 | het | 94.6237 | 97.7778 | 91.6667 | 88.4430 | 132 | 3 | 132 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 90.1457 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e0 | * | 98.4000 | 97.6190 | 99.1935 | 90.1587 | 123 | 3 | 123 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | segdup | het | 95.6989 | 96.7391 | 94.6809 | 94.0881 | 89 | 3 | 89 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2857 | 96.6292 | 100.0000 | 67.9104 | 86 | 3 | 86 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0874 | 94.3396 | 100.0000 | 68.9441 | 50 | 3 | 50 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 25.0000 | 100.0000 | 75.0000 | 1 | 3 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 81.6901 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 85.7143 | 80.0000 | 92.3077 | 83.5443 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 85.7143 | 80.0000 | 92.3077 | 83.7500 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 80.0000 | 72.7273 | 88.8889 | 83.0189 | 8 | 3 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 80.0000 | 72.7273 | 88.8889 | 85.0000 | 8 | 3 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 80.0000 | 72.7273 | 88.8889 | 85.0000 | 8 | 3 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | hetalt | 89.6552 | 81.2500 | 100.0000 | 79.4118 | 13 | 3 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | homalt | 90.0000 | 85.7143 | 94.7368 | 76.8293 | 18 | 3 | 18 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.0569 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.8519 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3415 | 99.4350 | 99.2481 | 82.1297 | 528 | 3 | 528 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 91.9065 | 42 | 3 | 42 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.2606 | 99.4444 | 99.0775 | 82.2062 | 537 | 3 | 537 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | * | 98.3003 | 98.2955 | 98.3051 | 91.4286 | 173 | 3 | 174 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | het | 98.0997 | 97.1698 | 99.0476 | 92.0814 | 103 | 3 | 104 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.5410 | 97.5410 | 97.5410 | 68.6375 | 119 | 3 | 119 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.0297 | 94.2308 | 100.0000 | 57.9832 | 49 | 3 | 50 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3437 | 97.5410 | 99.1597 | 59.6610 | 119 | 3 | 118 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3631 | 98.7342 | 100.0000 | 24.9201 | 234 | 3 | 235 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 91.1765 | 9 | 3 | 9 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | func_cds | homalt | 99.9716 | 99.9431 | 100.0000 | 21.4775 | 5272 | 3 | 5272 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.8773 | 99.7549 | 100.0000 | 64.8765 | 1221 | 3 | 1223 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8668 | 99.7340 | 100.0000 | 52.3709 | 1125 | 3 | 1125 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9262 | 99.9262 | 99.9262 | 45.5021 | 4062 | 3 | 4062 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9318 | 99.8637 | 100.0000 | 42.6858 | 2198 | 3 | 2198 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9248 | 99.9248 | 99.9248 | 37.2719 | 3984 | 3 | 3984 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8991 | 99.8789 | 99.9192 | 29.1154 | 2475 | 3 | 2474 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | func_cds | * | 99.9199 | 99.9314 | 99.9085 | 29.6249 | 4368 | 3 | 4367 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.7381 | 99.7754 | 99.7008 | 54.7087 | 1333 | 3 | 1333 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8263 | 99.7917 | 99.8610 | 69.1268 | 1437 | 3 | 1437 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.6047 | 99.4083 | 99.8020 | 85.1950 | 504 | 3 | 504 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9614 | 99.9228 | 100.0000 | 59.5375 | 3884 | 3 | 3884 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.9420 | 99.9130 | 99.9710 | 37.2906 | 3447 | 3 | 3443 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.0833 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | tech_badpromoters | het | 98.0132 | 96.1039 | 100.0000 | 46.3768 | 74 | 3 | 74 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9604 | 99.9703 | 99.9505 | 48.8948 | 10099 | 3 | 10099 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8668 | 99.7340 | 100.0000 | 42.5727 | 1125 | 3 | 1125 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 89.8305 | 66 | 3 | 66 | 0 | 0 | ||