PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39751-39800 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.7266 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m0_e0 | * | 93.4783 | 93.4783 | 93.4783 | 97.4011 | 43 | 3 | 43 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 60.4317 | 87.5000 | 46.1538 | 56.3025 | 21 | 3 | 24 | 28 | 26 | 92.8571 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 95.5224 | 95.5224 | 95.5224 | 84.7727 | 64 | 3 | 64 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.4444 | 3 | 3 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 96.4286 | 2 | 3 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 93.4783 | 5 | 3 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 94.0000 | 5 | 3 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.9433 | 88.0000 | 76.6667 | 85.7820 | 22 | 3 | 23 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.7966 | 86.9565 | 55.5556 | 81.0526 | 20 | 3 | 20 | 16 | 11 | 68.7500 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 25.0000 | 0.0000 | 95.8333 | 1 | 3 | 0 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.9565 | 76.9231 | 100.0000 | 67.7419 | 10 | 3 | 10 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 25.0000 | 100.0000 | 80.0000 | 1 | 3 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 85.7143 | 83.3333 | 88.2353 | 86.6142 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 92.6829 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 85.7143 | 83.3333 | 88.2353 | 88.3562 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 88.5906 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | * | 76.1905 | 72.7273 | 80.0000 | 87.9518 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.8077 | 94.1176 | 78.8462 | 89.0063 | 48 | 3 | 41 | 11 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.6217 | 88.0000 | 91.3043 | 43.9024 | 22 | 3 | 21 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 13.0435 | 20 | 3 | 20 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.9751 | 99.1202 | 98.8304 | 85.5635 | 338 | 3 | 338 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.9811 | 99.1254 | 98.8372 | 85.8553 | 340 | 3 | 340 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | homalt | 19.2440 | 90.3226 | 10.7692 | 63.7883 | 28 | 3 | 28 | 232 | 206 | 88.7931 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 92.9577 | 91.6667 | 94.2857 | 75.0000 | 33 | 3 | 33 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0973 | 94.2308 | 98.0392 | 54.0541 | 49 | 3 | 50 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.3636 | 87.5000 | 67.7419 | 76.6917 | 21 | 3 | 21 | 10 | 9 | 90.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.3913 | 94.9153 | 100.0000 | 60.8392 | 56 | 3 | 56 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m0_e0 | het | 90.3226 | 82.3529 | 100.0000 | 92.0455 | 14 | 3 | 14 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.7291 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.4035 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.6379 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l125_m0_e0 | * | 88.8889 | 80.0000 | 100.0000 | 94.3128 | 12 | 3 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 95.3846 | 6 | 3 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_siren | homalt | 95.0820 | 96.6667 | 93.5484 | 80.3383 | 87 | 3 | 87 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | * | func_cds | het | 99.9239 | 99.9731 | 99.8747 | 24.7221 | 11158 | 3 | 11158 | 14 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.7143 | 80.0000 | 92.3077 | 93.4673 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 95.9459 | 6 | 3 | 6 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l100_m1_e0 | hetalt | 95.0000 | 92.6829 | 97.4359 | 77.5862 | 38 | 3 | 38 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | hetalt | 95.2381 | 93.0233 | 97.5610 | 79.3970 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | HG002complexvar | hetalt | 98.5507 | 98.5507 | 98.5507 | 42.1788 | 204 | 3 | 204 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | ti | func_cds | het | 99.9236 | 99.9647 | 99.8825 | 23.1721 | 8501 | 3 | 8501 | 10 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.6667 | 81.2500 | 92.8571 | 96.5432 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8598 | 99.7898 | 99.9299 | 28.4855 | 1424 | 3 | 1425 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.9231 | 62.5000 | 100.0000 | 95.1456 | 5 | 3 | 5 | 0 | 0 | ||