PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39351-39400 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9333 | 99.8668 | 100.0000 | 51.4674 | 2249 | 3 | 2249 | 0 | 0 | ||
| ckim-gatk | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.0196 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.4348 | 66 | 3 | 66 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4452 | 99.5833 | 99.3075 | 87.8041 | 717 | 3 | 717 | 5 | 4 | 80.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.6068 | 99.2167 | 100.0000 | 83.3552 | 380 | 3 | 380 | 0 | 0 | ||
| ckim-gatk | SNP | tv | func_cds | het | 99.4192 | 99.8871 | 98.9556 | 44.4352 | 2654 | 3 | 2653 | 28 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7702 | 99.8620 | 99.6786 | 64.4814 | 2171 | 3 | 2171 | 7 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 97.0361 | 23 | 3 | 23 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.3226 | 82.3529 | 100.0000 | 97.5779 | 14 | 3 | 14 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 99.5238 | 9 | 3 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.5000 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 44.1860 | 22 | 3 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | het | 80.0532 | 93.4783 | 70.0000 | 96.1710 | 43 | 3 | 42 | 18 | 2 | 11.1111 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | het | 78.9957 | 93.7500 | 68.2540 | 96.5385 | 45 | 3 | 43 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | het | 79.3959 | 94.1176 | 68.6567 | 96.4037 | 48 | 3 | 46 | 21 | 3 | 14.2857 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.6452 | 89.2857 | 73.5294 | 97.5887 | 25 | 3 | 25 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | * | 76.9231 | 83.3333 | 71.4286 | 97.8373 | 15 | 3 | 15 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | * | 90.1639 | 94.8276 | 85.9375 | 97.1806 | 55 | 3 | 55 | 9 | 3 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.4959 | 6 | 3 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.0612 | 98.8372 | 97.2973 | 63.6236 | 255 | 3 | 252 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 80.6971 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5664 | 99.3506 | 99.7831 | 28.4161 | 459 | 3 | 460 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.5294 | 11 | 3 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 86.9565 | 76.9231 | 100.0000 | 95.9350 | 10 | 3 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.8333 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.8904 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.9381 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.1982 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.7974 | 5 | 3 | 5 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | het | 94.2847 | 97.2973 | 91.4530 | 95.8788 | 108 | 3 | 107 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | het | 94.7466 | 97.5207 | 92.1260 | 96.0730 | 118 | 3 | 117 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | het | 94.7887 | 97.5410 | 92.1875 | 96.1481 | 119 | 3 | 118 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 62.5000 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5374 | 99.6524 | 99.4226 | 64.3621 | 860 | 3 | 861 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.7973 | 90.9091 | 96.8750 | 63.2184 | 30 | 3 | 31 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7151 | 99.5733 | 99.8573 | 46.9743 | 700 | 3 | 700 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 98.4293 | 96.9072 | 100.0000 | 20.3390 | 94 | 3 | 94 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8254 | 95.3125 | 98.3871 | 89.1419 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 91.0377 | 128 | 3 | 128 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.4472 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0588 | 97.7778 | 96.3504 | 90.9631 | 132 | 3 | 132 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9697 | 95.5224 | 98.4615 | 89.3791 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | * | 93.6170 | 93.6170 | 93.6170 | 93.6913 | 44 | 3 | 44 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 84.9558 | 17 | 3 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | * | 96.5517 | 95.8904 | 97.2222 | 93.0165 | 70 | 3 | 70 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | * | 96.9325 | 96.3415 | 97.5309 | 93.1646 | 79 | 3 | 79 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_siren | homalt | 97.6923 | 97.6923 | 97.6923 | 86.7482 | 127 | 3 | 127 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2565 | 96.8421 | 97.6744 | 90.7527 | 92 | 3 | 84 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | HG002compoundhet | homalt | 62.2015 | 99.0881 | 45.3278 | 87.8082 | 326 | 3 | 325 | 392 | 391 | 99.7449 | |