PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
3851-3900 / 86044 show all
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
46.8255
38.7947
59.0491
58.6382
103016251155801315
39.3258
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
1.5161
0.0000
0.0000
251624000
qzeng-customSNPtvmap_l125_m2_e1homalt
84.2063
73.2631
98.9926
69.1889
4450162444224545
100.0000
hfeng-pmm2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9345
98.2816
99.5962
71.4015
92826162392734376307
81.6489
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3184
96.2571
98.4034
52.4797
41713162254546885782
88.3616
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_triTR_11to50*
87.3886
77.9606
99.4105
51.5253
573416215734346
17.6471
gduggal-bwafbSNP**homalt
99.9194
99.8626
99.9762
18.5273
117854116211178572280175
62.5000
jli-customINDEL*HG002compoundhethetalt
96.5598
93.5624
99.7556
52.2097
235591621236785857
98.2759
jpowers-varprowlSNPtimap_siren*
98.7281
98.3847
99.0739
58.8371
98734162198737923255
27.6273
ghariani-varprowlINDELI6_15HG002complexvar*
71.5536
66.2145
77.8293
58.1077
317316193191909871
95.8196
gduggal-snapplatSNP*map_l100_m0_e0het
93.0063
92.3697
93.6518
83.5542
195871618196061329738
55.5305
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01617000
gduggal-snapvardSNP*map_l125_m2_e0*
93.7014
96.5392
91.0256
79.3194
451061617445174389336
7.6555
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01617000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
92.6354
91.1441
94.1762
35.9848
166421617173031070870
81.3084
qzeng-customSNPtvmap_l125_m2_e0homalt
84.1423
73.1594
99.0054
69.1320
4402161543804444
100.0000
anovak-vgINDELD16_PLUS*hetalt
0.0000
16.4511
0.0000
0.0000
3181615000
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
86.5921
77.7149
97.7589
44.5846
563216155627129105
81.3953
gduggal-snapfbINDEL*HG002compoundhethet
71.1390
60.5520
86.2126
38.8614
247916152340537431778
47.5020
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
72.3381
57.0859
98.7121
81.9630
2147161421462819
67.8571
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
72.3381
57.0859
98.7121
81.9630
2147161421462819
67.8571
gduggal-snapfbSNP*map_l100_m2_e1*
97.7287
97.8404
97.6173
69.6430
731231614731291785689
38.5994
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0302
97.5303
98.5353
67.8515
63737161463506944836
88.5593
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0302
97.5303
98.5353
67.8515
63737161463506944836
88.5593
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
16.4164
0.0000
0.0000
3171614000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
16.4164
0.0000
0.0000
3171614000
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.2474
0.0000
0.0000
41613000
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.2474
0.0000
0.0000
41613000
gduggal-snapfbSNP*map_l100_m2_e0*
97.7110
97.8206
97.6017
69.6113
723521612723581778689
38.7514
anovak-vgINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
65.3950
71.2167
60.4531
49.7479
39861611584438232953
77.2430
cchapple-customINDEL**hetalt
0.0000
93.6165
0.0000
0.0000
236261611000
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.3711
0.0000
0.0000
61611000
ciseli-customSNPtvmap_l125_m0_e0het
70.2747
63.3947
78.8298
84.9536
27901611278974926
3.4713
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
55.8931
39.9329
93.1051
68.6867
107116111958145138
95.1724
eyeh-varpipeINDELD16_PLUS*hetalt
28.3581
16.7098
93.6210
67.5396
32316104993433
97.0588
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
28.2195
16.6235
93.3071
68.0905
32116104743433
97.0588
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
28.2195
16.6235
93.3071
68.0905
32116104743433
97.0588
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
57.8606
40.8740
99.0058
44.7850
1113161011951211
91.6667
anovak-vgINDELD16_PLUSHG002compoundhethetalt
0.0000
16.4938
0.0000
0.0000
3181610000
gduggal-snapplatSNP*lowcmp_SimpleRepeat_triTR_11to50*
86.9496
78.1237
98.0235
54.2271
57461609575311613
11.2069
gduggal-snapfbSNP*map_l100_m1_e0*
97.6767
97.7805
97.5731
67.6748
707961607708021761688
39.0687
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
36.7074
0.0000
0.0000
9321607000
astatham-gatkSNPtvmap_l150_m1_e0het
86.7142
76.8644
99.4596
83.0624
533916075337298
27.5862
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
40.2067
39.4727
40.9685
65.1113
10481607106615361023
66.6016
eyeh-varpipeINDELD16_PLUSHG002compoundhethetalt
28.4846
16.7531
95.0298
30.9066
32316054782525
100.0000
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.2695
91.8075
92.7362
81.6429
179751604178481398224
16.0229
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.2695
91.8075
92.7362
81.6429
179751604178481398224
16.0229
anovak-vgSNPtimap_l100_m0_e0homalt
88.2155
79.3671
99.2843
61.2798
6170160461044441
93.1818
anovak-vgSNPtvmap_l150_m2_e1*
79.4082
86.0633
73.7085
80.2069
9899160398883527846
23.9864
ndellapenna-hhgaINDELI1_5**
99.2393
98.9360
99.5445
55.9242
1490611603149032682431
63.1965