PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38451-38500 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | ti | tech_badpromoters | homalt | 94.9679 | 92.6829 | 97.3684 | 29.6296 | 38 | 3 | 37 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8362 | 99.8597 | 99.8128 | 76.4258 | 2135 | 3 | 2133 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7617 | 99.9506 | 99.5734 | 57.9016 | 6069 | 3 | 6069 | 26 | 25 | 96.1538 | |
| astatham-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 93.2660 | 40 | 3 | 40 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m0_e0 | * | 90.3614 | 96.1538 | 85.2273 | 97.7873 | 75 | 3 | 75 | 13 | 2 | 15.3846 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8914 | 99.7831 | 100.0000 | 57.0227 | 1380 | 3 | 1380 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8976 | 99.7954 | 100.0000 | 42.9630 | 1463 | 3 | 1463 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.3084 | 66 | 3 | 66 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8864 | 99.8637 | 99.9091 | 41.9065 | 2198 | 3 | 2198 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 53.6424 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 91.8159 | 30 | 3 | 32 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 96.1039 | 92.5000 | 100.0000 | 93.3333 | 37 | 3 | 37 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 93.8583 | 39 | 3 | 39 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 93.0233 | 86.9565 | 100.0000 | 95.7916 | 20 | 3 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | tech_badpromoters | homalt | 95.2381 | 90.9091 | 100.0000 | 60.5263 | 30 | 3 | 30 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5423 | 98.2558 | 98.8304 | 81.6327 | 169 | 3 | 169 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.2840 | 98.5782 | 100.0000 | 47.6071 | 208 | 3 | 208 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0291 | 99.3506 | 98.7097 | 63.5580 | 459 | 3 | 459 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.6957 | 98.6957 | 98.6957 | 72.7488 | 227 | 3 | 227 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 70.5882 | 75.0000 | 66.6667 | 99.4646 | 9 | 3 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 40.0000 | 40.0000 | 40.0000 | 99.5421 | 2 | 3 | 2 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.0377 | 70.0000 | 62.5000 | 99.5059 | 7 | 3 | 5 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | decoy | * | 66.6667 | 50.0000 | 100.0000 | 98.7603 | 3 | 3 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | func_cds | het | 76.9231 | 62.5000 | 100.0000 | 64.2857 | 5 | 3 | 5 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 94.4444 | 1 | 3 | 1 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 25.0000 | 0.0000 | 96.2264 | 1 | 3 | 0 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.1971 | 86.9565 | 89.4737 | 77.1084 | 20 | 3 | 17 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.6102 | 2 | 3 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.6102 | 4 | 3 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 95.1807 | 4 | 3 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | * | 33.3333 | 25.0000 | 50.0000 | 50.0000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | het | 40.0000 | 25.0000 | 100.0000 | 0.0000 | 1 | 3 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 70.1754 | 62.5000 | 80.0000 | 99.4253 | 5 | 3 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 57.1429 | 80.0000 | 99.3990 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.6301 | 3 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | het | 77.9618 | 85.0000 | 72.0000 | 93.6869 | 17 | 3 | 18 | 7 | 5 | 71.4286 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | het | 77.7385 | 78.5714 | 76.9231 | 96.9697 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | het | 77.7385 | 78.5714 | 76.9231 | 97.0455 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 66.6667 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 34.2857 | 40.0000 | 30.0000 | 77.2727 | 2 | 3 | 3 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 32.4324 | 40.0000 | 27.2727 | 80.0000 | 2 | 3 | 3 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 32.4324 | 40.0000 | 27.2727 | 80.0000 | 2 | 3 | 3 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I16_PLUS | map_l150_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 77.7778 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.0808 | 99.3135 | 84.1085 | 47.7204 | 434 | 3 | 434 | 82 | 82 | 100.0000 | |