PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37801-37850 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I1_5 | func_cds | * | 98.5994 | 97.7778 | 99.4350 | 29.7619 | 176 | 4 | 176 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | func_cds | homalt | 98.2906 | 96.6387 | 100.0000 | 22.2973 | 115 | 4 | 115 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | homalt | 71.4286 | 55.5556 | 100.0000 | 95.3704 | 5 | 4 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 92.7536 | 88.8889 | 96.9697 | 47.6190 | 32 | 4 | 32 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 43.7500 | 8 | 4 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 90.9774 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.0407 | 91.6667 | 77.5862 | 88.2114 | 44 | 4 | 45 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.1565 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.8918 | 92.1569 | 78.6885 | 88.0626 | 47 | 4 | 48 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.2162 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | * | 87.2727 | 85.7143 | 88.8889 | 92.1053 | 24 | 4 | 24 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | segdup | * | 93.1619 | 93.1034 | 93.2203 | 92.7785 | 54 | 4 | 55 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | segdup | hetalt | 71.4286 | 55.5556 | 100.0000 | 92.0635 | 5 | 4 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.2405 | 99.3243 | 99.1568 | 82.6608 | 588 | 4 | 588 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.2641 | 99.3453 | 99.1830 | 83.4862 | 607 | 4 | 607 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1914 | 98.9247 | 99.4595 | 86.5160 | 368 | 4 | 368 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | het | 96.3964 | 96.3964 | 96.3964 | 95.2625 | 107 | 4 | 107 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6942 | 96.6942 | 96.6942 | 95.4167 | 117 | 4 | 117 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | het | 96.7213 | 96.7213 | 96.7213 | 95.4647 | 118 | 4 | 118 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5303 | 98.9305 | 98.1333 | 57.4347 | 370 | 4 | 368 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5138 | 97.4194 | 95.6250 | 82.3982 | 151 | 4 | 153 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 62.5000 | 55.5556 | 71.4286 | 98.1818 | 5 | 4 | 5 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2098 | 99.0971 | 99.3228 | 35.3285 | 439 | 4 | 440 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | * | 93.5245 | 91.4894 | 95.6522 | 92.2166 | 43 | 4 | 44 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 90.4232 | 87.5000 | 93.5484 | 93.6214 | 28 | 4 | 29 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 94.4444 | 5 | 4 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_siren | het | 94.1776 | 98.5714 | 90.1587 | 84.4291 | 276 | 4 | 284 | 31 | 19 | 61.2903 | |
| egarrison-hhga | INDEL | D6_15 | segdup | het | 94.7244 | 95.6522 | 93.8144 | 94.1033 | 88 | 4 | 91 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.5000 | 77.7778 | 100.0000 | 78.3784 | 14 | 4 | 16 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.0784 | 92.4528 | 100.0000 | 69.3750 | 49 | 4 | 49 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 75.8865 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | * | 78.5714 | 73.3333 | 84.6154 | 88.7931 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | * | 78.5714 | 73.3333 | 84.6154 | 90.1515 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | * | 78.5714 | 73.3333 | 84.6154 | 90.2985 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.7556 | 98.0000 | 97.5124 | 66.4441 | 196 | 4 | 196 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 55.5556 | 100.0000 | 5 | 4 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l125_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 86.6667 | 2 | 4 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 99.3548 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | het | 33.3333 | 20.0000 | 100.0000 | 99.3631 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 22.9167 | 37 | 4 | 37 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 71.4286 | 55.5556 | 100.0000 | 92.8571 | 5 | 4 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | tv | tech_badpromoters | homalt | 94.5946 | 89.7436 | 100.0000 | 25.5319 | 35 | 4 | 35 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8475 | 99.4543 | 98.2480 | 73.3285 | 729 | 4 | 729 | 13 | 13 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.2687 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.8515 | 19 | 4 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 84.6154 | 73.3333 | 100.0000 | 94.6602 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 85.8824 | 11 | 4 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | het | 96.7234 | 94.8718 | 98.6486 | 85.2883 | 74 | 4 | 73 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.9526 | 94.2029 | 95.7143 | 65.8537 | 65 | 4 | 67 | 3 | 3 | 100.0000 | |