PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37501-37550 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.7612 | 97.0370 | 98.4962 | 87.8205 | 131 | 4 | 131 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2609 | 96.5812 | 100.0000 | 88.8008 | 113 | 4 | 113 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | segdup | het | 97.7778 | 95.6522 | 100.0000 | 94.1216 | 88 | 4 | 88 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.0000 | 85.1852 | 100.0000 | 91.1504 | 23 | 4 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 76.1364 | 19 | 4 | 21 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | * | 95.3756 | 95.3488 | 95.4023 | 91.3087 | 82 | 4 | 83 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 74.6479 | 108 | 4 | 108 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3569 | 98.7220 | 100.0000 | 35.2201 | 309 | 4 | 309 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.5533 | 98.7097 | 98.3974 | 87.4598 | 306 | 4 | 307 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4320 | 97.9167 | 98.9529 | 88.7448 | 188 | 4 | 189 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | * | 98.0105 | 97.7273 | 98.2955 | 90.9558 | 172 | 4 | 173 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6122 | 96.2264 | 99.0385 | 92.2906 | 102 | 4 | 103 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 86.7647 | 108 | 4 | 108 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | segdup | het | 99.5342 | 99.2565 | 99.8134 | 94.7961 | 534 | 4 | 535 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8571 | 97.7401 | 100.0000 | 71.8699 | 173 | 4 | 173 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 81.9477 | 151 | 4 | 152 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | het | 83.8710 | 76.4706 | 92.8571 | 91.8129 | 13 | 4 | 13 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 95.4887 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 93.9726 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 94.7115 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.5378 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | func_cds | het | 99.9001 | 99.9530 | 99.8473 | 22.7326 | 8500 | 4 | 8498 | 13 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9373 | 99.8997 | 99.9749 | 35.9073 | 3983 | 4 | 3983 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | map_l250_m0_e0 | homalt | 98.8924 | 99.3641 | 98.4252 | 92.6877 | 625 | 4 | 625 | 10 | 5 | 50.0000 | |
| hfeng-pmm2 | SNP | ti | HG002compoundhet | homalt | 99.9324 | 99.9459 | 99.9189 | 30.7750 | 7390 | 4 | 7390 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | func_cds | * | 99.9166 | 99.9710 | 99.8623 | 22.6414 | 13783 | 4 | 13781 | 19 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8634 | 99.7271 | 100.0000 | 46.4273 | 1462 | 4 | 1462 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | HG002compoundhet | homalt | 74.6579 | 99.4169 | 59.7721 | 77.4506 | 682 | 4 | 682 | 459 | 454 | 98.9107 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | homalt | 99.3179 | 99.4536 | 99.1826 | 83.3974 | 728 | 4 | 728 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | homalt | 99.2806 | 99.4758 | 99.0862 | 84.5627 | 759 | 4 | 759 | 7 | 3 | 42.8571 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | hetalt | 95.1220 | 90.6977 | 100.0000 | 93.2642 | 39 | 4 | 39 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | homalt | 99.2908 | 99.4832 | 99.0991 | 84.6836 | 770 | 4 | 770 | 7 | 3 | 42.8571 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | homalt | 98.9201 | 99.1342 | 98.7069 | 86.2069 | 458 | 4 | 458 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5337 | 97.6744 | 99.4083 | 80.0236 | 168 | 4 | 168 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5124 | 96.0784 | 98.9899 | 59.2593 | 98 | 4 | 98 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.2277 | 22 | 4 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.2086 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4843 | 99.6244 | 99.3446 | 67.0980 | 1061 | 4 | 1061 | 7 | 7 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | * | 96.2264 | 96.2264 | 96.2264 | 95.4132 | 102 | 4 | 102 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.1691 | 56 | 4 | 56 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | * | 96.4602 | 96.4602 | 96.4602 | 95.8623 | 109 | 4 | 109 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3846 | 93.9394 | 96.8750 | 96.3801 | 62 | 4 | 62 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | * | 96.4912 | 96.4912 | 96.4912 | 95.9474 | 110 | 4 | 110 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3846 | 93.9394 | 96.8750 | 96.4912 | 62 | 4 | 62 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8571 | 97.7401 | 100.0000 | 72.7129 | 173 | 4 | 173 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.7368 | 98.1043 | 91.5929 | 67.5287 | 207 | 4 | 207 | 19 | 18 | 94.7368 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.0876 | 98.7138 | 93.5976 | 68.7321 | 307 | 4 | 307 | 21 | 20 | 95.2381 | |
| hfeng-pmm1 | SNP | * | map_l250_m0_e0 | homalt | 98.8924 | 99.3641 | 98.4252 | 92.6624 | 625 | 4 | 625 | 10 | 5 | 50.0000 | |
| hfeng-pmm1 | SNP | ti | func_cds | het | 99.9060 | 99.9530 | 99.8590 | 22.2902 | 8500 | 4 | 8498 | 12 | 0 | 0.0000 | |