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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
3701-3750 / 86044 show all
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
8.9302
5.4426
24.8629
78.7573
991720136411255
62.0438
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
8.9302
5.4426
24.8629
78.7573
991720136411255
62.0438
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.7984
28.7018
41.0959
58.9386
6921719690989957
96.7644
astatham-gatkSNPtvmap_l150_m2_e0*
91.6536
84.8613
99.6277
80.3003
9636171996343613
36.1111
ckim-isaacINDELD1_5HG002compoundhet*
88.8135
85.9501
91.8743
43.5269
10516171910436923829
89.8158
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200*
19.2653
18.2294
20.4260
59.9344
383171837414571446
99.2450
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.0244
95.4725
96.5827
67.7509
3618617163612012781242
97.1831
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
51.3821
35.1740
95.2929
41.6005
93017149114535
77.7778
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.0986
72.9041
93.9468
53.8786
460917134625298190
63.7584
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.0986
72.9041
93.9468
53.8786
460917134625298190
63.7584
jmaeng-gatkSNPtvmap_l100_m0_e0het
84.7992
76.2808
95.4593
88.1483
55091713550826210
3.8168
ciseli-customSNPtimap_l150_m0_e0het
72.0997
66.3920
78.8811
87.9805
33841713338490629
3.2009
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.3810
94.8490
75.9939
75.6668
3152417123155899699887
99.1775
qzeng-customSNPtimap_l125_m0_e0homalt
76.3240
61.9906
99.2790
71.5020
2784170727542019
95.0000
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0585
0.0000
0.0000
11707000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.2342
0.0000
0.0000
41704000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.2342
0.0000
0.0000
41704000
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.2598
94.5285
96.0025
68.9889
294391704294431226756
61.6639
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.2598
94.5285
96.0025
68.9889
294391704294431226756
61.6639
mlin-fermikitINDEL*map_siren*
83.8340
77.0310
91.9549
78.2144
570817025715500406
81.2000
ciseli-customSNPtimap_l100_m2_e1homalt
91.1369
90.8132
91.4629
61.7425
1679516991675615641245
79.6036
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
35.7791
0.0000
0.0000
9461698000
gduggal-snapplatSNPtimap_sirenhomalt
97.6833
95.5270
99.9392
52.4384
362201696361802218
81.8182
jpowers-varprowlSNPtvHG002complexvarhet
99.3313
98.8748
99.7919
23.6187
149035169614915531160
19.2926
astatham-gatkSNPtvmap_l150_m2_e1het
86.7689
76.9325
99.4894
83.9661
565316955651298
27.5862
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
81.2908
70.4641
96.0486
65.7173
40391693403516629
17.4699
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.1643
88.4244
98.4410
44.1529
12925169227215431341
79.1183
gduggal-bwavardSNP*HG002compoundhethomalt
91.3621
84.3072
99.7055
35.4356
9090169277882319
82.6087
gduggal-snapplatINDELD16_PLUS*homalt
0.0000
0.0000
0.0000
01692000
gduggal-snapfbINDELD16_PLUS*homalt
0.0000
0.0000
0.0000
01692000
gduggal-bwavardINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
55.2299
52.5133
58.2428
71.2539
18701691187613451229
91.3755
gduggal-bwaplatSNP*HG002compoundhethet
83.0864
88.0801
78.6286
53.0695
124881690126713444265
7.6945
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
66.8635
56.6333
81.6046
52.1656
220716901424321304
94.7040
anovak-vgINDELI6_15HG002complexvarhet
40.0214
28.2378
68.6825
52.4803
6651690954435281
64.5977
ckim-vqsrSNPtvmap_l250_m2_e1*
58.7446
42.0439
97.4563
97.2616
122616901226320
0.0000
qzeng-customSNPtvmap_l100_m0_e0het
85.0006
76.5993
95.4718
87.4215
553216905524262216
82.4427
rpoplin-dv42SNP***
99.9587
99.9447
99.9728
19.0681
305293016893052766832433
52.0433
eyeh-varpipeINDELI1_5HG002complexvar*
95.9629
94.9405
97.0075
49.9241
31675168831023957917
95.8203
ciseli-customSNPtimap_l100_m2_e0homalt
91.1050
90.7805
91.4319
61.7718
1662116881658315541237
79.6010
gduggal-snapplatSNPtvmap_l100_m2_e1*
94.9238
93.3394
96.5629
79.3964
23599168423599840407
48.4524
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
58.2911
54.3260
62.8805
55.6252
20031684200411831139
96.2806
gduggal-bwavardSNP*map_sirenhomalt
98.4056
96.9468
99.9088
52.1457
534721684526084840
83.3333
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
71.2981
57.7309
93.2011
73.4101
23001684230316853
31.5476
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
84.7019
75.5446
96.3855
35.1952
520216845200195193
98.9744
ciseli-customINDELI1_5HG002complexvarhomalt
88.0614
87.4926
88.6376
45.0592
1176616821152214771282
86.7976
jpowers-varprowlINDELI1_5HG002complexvarhetalt
0.0000
2.5492
0.0000
0.0000
441682000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
84.1619
82.2267
86.1905
45.3886
77771681778312471228
98.4763
ciseli-customSNPtimap_l100_m1_e0homalt
90.9965
90.6459
91.3498
59.1340
1628016801624215381227
79.7789
gduggal-bwavardINDELI6_15HG002complexvar*
69.2732
64.9624
74.1967
53.0461
3113167930481060990
93.3962
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
91.0608
87.8273
94.5415
37.6092
12107167812020694633
91.2104