PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37151-37200 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9633 | 106 | 4 | 106 | 0 | 0 | ||
| astatham-gatk | SNP | * | tech_badpromoters | het | 97.3333 | 94.8052 | 100.0000 | 51.6556 | 73 | 4 | 73 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7781 | 99.6454 | 99.9111 | 42.4847 | 1124 | 4 | 1124 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9498 | 99.8997 | 100.0000 | 34.2631 | 3983 | 4 | 3983 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.7977 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| astatham-gatk | SNP | tv | * | hetalt | 99.7699 | 99.5408 | 100.0000 | 40.6164 | 867 | 4 | 867 | 0 | 0 | ||
| astatham-gatk | SNP | tv | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.4932 | 858 | 4 | 858 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.1660 | 96.7742 | 97.5610 | 90.7029 | 120 | 4 | 120 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | * | func_cds | het | 98.5959 | 98.1308 | 99.0654 | 61.0909 | 210 | 4 | 212 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.6190 | 92.0000 | 83.6364 | 85.0949 | 46 | 4 | 46 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 95.1220 | 90.6977 | 100.0000 | 93.9908 | 39 | 4 | 39 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m0_e0 | homalt | 89.3617 | 84.0000 | 95.4545 | 97.8744 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 69.0987 | 72 | 4 | 72 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.3046 | 98.8920 | 99.7207 | 63.3572 | 357 | 4 | 357 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.9608 | 97.6331 | 62.1622 | 84.2553 | 165 | 4 | 69 | 42 | 41 | 97.6190 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5777 | 97.5610 | 95.6140 | 88.7352 | 160 | 4 | 109 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4340 | 99.0991 | 99.7712 | 75.6817 | 440 | 4 | 436 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8600 | 99.6324 | 98.0995 | 67.6806 | 1084 | 4 | 1084 | 21 | 19 | 90.4762 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.1159 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.7037 | 22 | 4 | 23 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.1304 | 22 | 4 | 24 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.7381 | 27 | 4 | 29 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9411 | 99.9607 | 99.9214 | 54.3285 | 10174 | 4 | 10174 | 8 | 8 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 95.5556 | 91.4894 | 100.0000 | 90.5495 | 43 | 4 | 43 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 90.8163 | 44 | 4 | 45 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 95.9184 | 92.1569 | 100.0000 | 90.4573 | 47 | 4 | 48 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_siren | homalt | 99.6154 | 99.6575 | 99.5734 | 81.2660 | 1164 | 4 | 1167 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2332 | 96.8504 | 97.6190 | 78.9649 | 123 | 4 | 123 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.5365 | 99.6524 | 63.5095 | 859 | 4 | 860 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.6429 | 92.9825 | 96.3636 | 99.4786 | 53 | 4 | 53 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.6829 | 90.4762 | 95.0000 | 99.3670 | 38 | 4 | 38 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.1311 | 96.9466 | 93.3824 | 90.3546 | 127 | 4 | 127 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.2727 | 97.0370 | 93.5714 | 90.2643 | 131 | 4 | 131 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 97.4138 | 96.5812 | 98.2609 | 91.2080 | 113 | 4 | 113 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2248 | 98.9691 | 99.4819 | 76.0248 | 384 | 4 | 384 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | * | 94.2920 | 95.3488 | 93.2584 | 92.7642 | 82 | 4 | 83 | 6 | 1 | 16.6667 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 75.1152 | 108 | 4 | 108 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.1429 | 95.1220 | 83.8710 | 75.9067 | 78 | 4 | 78 | 15 | 15 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.4375 | 99.2995 | 97.5904 | 67.0261 | 567 | 4 | 567 | 14 | 14 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 92.0635 | 87.8788 | 96.6667 | 92.5558 | 29 | 4 | 29 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 94.8276 | 93.2203 | 96.4912 | 88.7352 | 55 | 4 | 55 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0000 | 93.4426 | 96.6102 | 89.2139 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0000 | 93.4426 | 96.6102 | 89.4454 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_siren | hetalt | 97.1429 | 94.4444 | 100.0000 | 78.4810 | 68 | 4 | 68 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | segdup | * | 98.5591 | 97.7143 | 99.4186 | 92.8003 | 171 | 4 | 171 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | * | hetalt | 99.7699 | 99.5408 | 100.0000 | 40.6164 | 867 | 4 | 867 | 0 | 0 | ||
| astatham-gatk | SNP | * | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.4932 | 858 | 4 | 858 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7147 | 99.4310 | 100.0000 | 46.1064 | 699 | 4 | 699 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||