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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
3651-3700 / 86044 show all
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
82.7666
91.0205
75.8851
82.6190
178201758177045626180
3.1994
ciseli-customSNP*map_l150_m1_e0homalt
86.3052
84.4052
88.2927
70.7708
95151758949512591014
80.5401
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_51to200*
23.1772
16.4208
39.3809
42.5111
3451756458705585
82.9787
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
57.4030
44.5498
80.6804
63.6484
141017551328318230
72.3270
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
85.8383
78.3200
94.9533
28.7854
63401755203210863
58.3333
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
79.6648
84.2067
75.5878
57.5613
93521754948430631008
32.9089
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
56.7870
50.7723
64.4183
57.0048
180817531805997979
98.1946
gduggal-bwaplatSNP*map_l250_m1_e0homalt
44.8992
28.9484
100.0000
95.4511
713175071200
ckim-vqsrSNPtvmap_l125_m0_e0het
74.6025
60.2363
97.9675
92.7270
265117502651550
0.0000
ltrigg-rtg1INDELI1_5**
99.3139
98.8385
99.7940
55.2555
1489131750148225306127
41.5033
gduggal-bwavardINDELI1_5*het
92.1214
97.7872
87.0762
61.9735
772921749768631140810744
94.1795
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.1128
65.0730
97.6884
78.4680
3253174632547759
76.6234
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.1128
65.0730
97.6884
78.4680
3253174632547759
76.6234
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
86.6613
87.3341
85.9988
44.9670
1203917461321221511124
52.2548
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
59.5457
53.6378
66.9161
58.0784
2020174621461061754
71.0650
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
59.5457
53.6378
66.9161
58.0784
2020174621461061754
71.0650
asubramanian-gatkSNP*map_l250_m0_e0*
30.8789
18.2670
99.7442
99.0504
390174539011
100.0000
astatham-gatkSNPtvmap_l150_m2_e1*
91.6416
84.8374
99.6324
80.3148
9758174497563613
36.1111
hfeng-pmm2SNP*HG002complexvar*
99.8743
99.7689
99.9799
18.8346
752638174375249515159
39.0728
jli-customINDEL*HG002compoundhet*
95.6209
94.1822
97.1042
61.3856
28217174328100838804
95.9427
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
20.4566
0.0000
0.0000
4481742000
gduggal-snapplatSNP*map_l150_m0_e0*
89.5961
85.5219
94.0779
88.4577
10290174210294648357
55.0926
gduggal-snapfbINDELI6_15HG002complexvar*
72.9303
63.6686
85.3453
43.1989
305117413040522491
94.0613
ghariani-varprowlSNP*HG002complexvarhet
99.2312
99.6262
98.8393
22.3346
46375217404640235449138
2.5326
ciseli-customINDELI6_15HG002complexvarhet
39.0345
26.1146
77.2559
60.9179
6151740625184138
75.0000
gduggal-snapfbINDELI6_15*homalt
78.8948
72.1430
87.0410
39.6459
450117384480667645
96.7016
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
56.6451
52.8614
61.0122
54.6408
19491738195312481228
98.3974
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.2469
84.8746
98.6537
45.5252
974717379746133101
75.9398
ciseli-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
4.7201
0.0000
0.0000
861736000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4936
95.9940
99.0408
57.8182
41599173641405401351
87.5312
ltrigg-rtg2SNPti*het
99.8504
99.8647
99.8361
15.7716
128015917351280167210175
3.5697
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
75.6874
87.3937
66.7467
68.5588
1202117341251162332150
34.4938
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
75.6874
87.3937
66.7467
68.5588
1202117341251162332150
34.4938
ciseli-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
2.0892
0.0000
0.0000
371734000
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
60.9265
84.9007
47.5105
54.7800
975017349733107539871
91.7976
anovak-vgINDELD6_15HG002complexvar*
72.7472
67.2954
79.1602
52.2024
356817343582943676
71.6861
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
90.4993
83.4558
98.8412
37.5745
8742173329003426
76.4706
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_diTR_51to200*
18.9766
17.5155
20.7036
55.4928
368173335913751359
98.8364
gduggal-bwafbSNPti*het
99.7363
99.8649
99.6080
22.2231
1280165173212802845038382
7.5824
hfeng-pmm1SNP*HG002complexvar*
99.8780
99.7704
99.9859
18.8078
752649173275250410651
48.1132
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200*
23.1444
17.6107
33.7493
43.2911
370173164912741040
81.6327
gduggal-snapvardINDELD1_5*het
88.4948
98.0268
80.6523
58.4318
8584417281159492781521843
78.5296
gduggal-bwafbINDELI1_5*hetalt
90.3216
84.5735
96.9081
78.3569
946817274294137135
98.5401
gduggal-snapfbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
87.7974
81.4329
95.2411
80.6685
757017263002150102
68.0000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.9877
74.1728
96.7962
69.7744
49541725495516454
32.9268
raldana-dualsentieonSNP*HG002complexvar*
99.8769
99.7713
99.9826
18.8281
752656172575251113147
35.8779
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
88.5672
91.1998
86.0824
76.7383
178561723183392965857
28.9039
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.5672
91.1998
86.0824
76.7383
178561723183392965857
28.9039
ckim-gatkSNPtvmap_l100_m0_e0het
84.8412
76.1423
95.7840
87.8860
54991723549824211
4.5455
gduggal-bwafbINDELI1_5HG002compoundhethetalt
91.0057
84.5844
98.4821
73.0807
9454172342826666
100.0000