PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36851-36900 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.4706 | 22 | 4 | 24 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_siren | het | 96.0512 | 94.8718 | 97.2603 | 93.9167 | 74 | 4 | 71 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.5517 | 94.5946 | 98.5915 | 79.1789 | 70 | 4 | 70 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.7854 | 98.9446 | 92.8218 | 59.3152 | 375 | 4 | 375 | 29 | 29 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9411 | 99.9607 | 99.9214 | 54.0979 | 10174 | 4 | 10174 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 58.6592 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.7447 | 91.8367 | 100.0000 | 25.0000 | 45 | 4 | 45 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9388 | 9 | 4 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.7164 | 11 | 4 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.7930 | 11 | 4 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 97.2973 | 98.0198 | 96.5854 | 90.5790 | 198 | 4 | 198 | 7 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | segdup | het | 99.4935 | 99.4220 | 99.5652 | 94.2192 | 688 | 4 | 687 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4256 | 99.8900 | 98.9654 | 59.3515 | 3634 | 4 | 3635 | 38 | 37 | 97.3684 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.5946 | 89.7436 | 100.0000 | 53.9474 | 35 | 4 | 35 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.5365 | 99.6524 | 61.5590 | 859 | 4 | 860 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.1122 | 87.8788 | 96.7742 | 59.7403 | 29 | 4 | 30 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.2022 | 97.5155 | 80.5128 | 34.1216 | 157 | 4 | 157 | 38 | 38 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 21.1864 | 93 | 4 | 93 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 96.2406 | 94.1176 | 98.4615 | 71.9828 | 64 | 4 | 64 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 96.5923 | 96.9466 | 96.2406 | 87.4882 | 127 | 4 | 128 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.2406 | 94.1176 | 98.4615 | 73.6842 | 64 | 4 | 64 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 96.6925 | 97.0370 | 96.3504 | 87.3733 | 131 | 4 | 132 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 97.9920 | 96.8254 | 99.1870 | 89.2576 | 122 | 4 | 122 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8655 | 98.7055 | 99.0260 | 67.1642 | 305 | 4 | 305 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.5517 | 91.4894 | 97.8261 | 77.4510 | 43 | 4 | 45 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 89.7959 | 84.6154 | 95.6522 | 94.0415 | 22 | 4 | 22 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.2745 | 84.6154 | 88.0000 | 94.3311 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 86.2745 | 84.6154 | 88.0000 | 94.3694 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6114 | 99.4825 | 99.7406 | 76.8607 | 769 | 4 | 769 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.4901 | 95.1220 | 90.0000 | 74.9304 | 78 | 4 | 81 | 9 | 9 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.2743 | 85.1852 | 64.2857 | 85.4167 | 23 | 4 | 9 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 98.5507 | 98.7097 | 98.3923 | 87.2069 | 306 | 4 | 306 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4293 | 97.9167 | 98.9474 | 87.9975 | 188 | 4 | 188 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 98.0057 | 97.7273 | 98.2857 | 90.7846 | 172 | 4 | 172 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6077 | 96.2264 | 99.0291 | 91.8124 | 102 | 4 | 102 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 96.6825 | 96.2264 | 97.1429 | 95.3146 | 102 | 4 | 102 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 95.7265 | 93.3333 | 98.2456 | 96.0798 | 56 | 4 | 56 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 96.8889 | 96.4602 | 97.3214 | 95.7656 | 109 | 4 | 109 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 96.1240 | 93.9394 | 98.4127 | 96.2985 | 62 | 4 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 96.9163 | 96.4912 | 97.3451 | 95.8684 | 110 | 4 | 110 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 96.1240 | 93.9394 | 98.4127 | 96.4286 | 62 | 4 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | segdup | het | 99.3483 | 99.2565 | 99.4403 | 94.7265 | 534 | 4 | 533 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.9394 | 88.5714 | 100.0000 | 89.0625 | 31 | 4 | 28 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 95.1220 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.0594 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.6188 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.3966 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.7273 | 85.7143 | 63.1579 | 96.7438 | 24 | 4 | 24 | 14 | 1 | 7.1429 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||