PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36801-36850 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.6829 | 93.4426 | 91.9355 | 92.0308 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.6829 | 93.4426 | 91.9355 | 92.2111 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 75.8621 | 73.3333 | 78.5714 | 96.3731 | 11 | 4 | 11 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 86.6667 | 86.6667 | 86.6667 | 94.3609 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 86.6667 | 86.6667 | 86.6667 | 95.0166 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 86.6667 | 86.6667 | 86.6667 | 95.1378 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.2675 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.7078 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 86.7925 | 85.1852 | 88.4615 | 96.5517 | 23 | 4 | 23 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 97.9860 | 23 | 4 | 23 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.3243 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.3243 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 47.6351 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7896 | 99.7197 | 99.8596 | 27.8116 | 1423 | 4 | 1423 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.8636 | 1 | 4 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 94.8579 | 36 | 4 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 96.8750 | 19 | 4 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | segdup | homalt | 99.6351 | 99.5833 | 99.6868 | 92.9210 | 956 | 4 | 955 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.1659 | 98.8920 | 99.4413 | 56.2882 | 357 | 4 | 356 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5927 | 99.1886 | 100.0000 | 51.1512 | 489 | 4 | 488 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.3820 | 91.3043 | 97.6744 | 49.4118 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 88.2883 | 12 | 4 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 88.4956 | 12 | 4 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 90.1158 | 85.1852 | 95.6522 | 89.5928 | 23 | 4 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 90.1158 | 85.1852 | 95.6522 | 90.6504 | 23 | 4 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.8485 | 77.7778 | 93.3333 | 91.8033 | 14 | 4 | 14 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | * | 94.7368 | 93.1034 | 96.4286 | 92.2971 | 54 | 4 | 54 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.5961 | 94.5946 | 98.6842 | 87.1622 | 70 | 4 | 75 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.2603 | 94.6667 | 100.0000 | 64.9038 | 71 | 4 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5087 | 99.3453 | 99.6727 | 80.7741 | 607 | 4 | 609 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5161 | 99.3548 | 99.6779 | 80.8747 | 616 | 4 | 619 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | homalt | 99.7001 | 99.6575 | 99.7427 | 77.3460 | 1164 | 4 | 1163 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.4293 | 97.9167 | 98.9474 | 40.2516 | 188 | 4 | 188 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8254 | 96.8254 | 96.8254 | 81.9742 | 122 | 4 | 122 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9348 | 96.9466 | 96.9231 | 82.5034 | 127 | 4 | 126 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 82.5459 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | het | 96.7742 | 93.7500 | 100.0000 | 86.1751 | 60 | 4 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.1014 | 94.3662 | 100.0000 | 86.1635 | 67 | 4 | 66 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1014 | 94.3662 | 100.0000 | 86.4198 | 67 | 4 | 66 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 79.6646 | 82.6087 | 76.9231 | 78.5124 | 19 | 4 | 20 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.2258 | 91.1111 | 97.5610 | 75.0000 | 41 | 4 | 40 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 44.4444 | 33.3333 | 66.6667 | 88.0000 | 2 | 4 | 2 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4524 | 99.5614 | 99.3435 | 66.3352 | 908 | 4 | 908 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2456 | 97.6744 | 98.8235 | 80.0937 | 168 | 4 | 168 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.9807 | 96.8504 | 93.1818 | 46.5587 | 123 | 4 | 123 | 9 | 8 | 88.8889 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 91.3043 | 84.0000 | 100.0000 | 42.5000 | 21 | 4 | 23 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 92.2335 | 91.3043 | 93.1818 | 93.9477 | 42 | 4 | 41 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 75.7895 | 22 | 4 | 23 | 0 | 0 | ||