PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36751-36800 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I6_15 | map_siren | hetalt | 97.1429 | 94.4444 | 100.0000 | 77.5578 | 68 | 4 | 68 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9556 | 106 | 4 | 106 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1456 | 96.0784 | 94.2308 | 92.3134 | 98 | 4 | 98 | 6 | 3 | 50.0000 | |
| jli-custom | SNP | ti | func_cds | het | 99.8825 | 99.9530 | 99.8121 | 22.8972 | 8500 | 4 | 8500 | 16 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7542 | 99.8360 | 99.6725 | 49.7429 | 2435 | 4 | 2435 | 8 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6207 | 99.7468 | 99.4949 | 51.0355 | 1576 | 4 | 1576 | 8 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3587 | 99.9407 | 98.7835 | 42.3002 | 6740 | 4 | 6740 | 83 | 1 | 1.2048 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8465 | 99.8976 | 99.7954 | 28.9038 | 3902 | 4 | 3903 | 8 | 1 | 12.5000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4652 | 99.1471 | 99.7854 | 85.6439 | 465 | 4 | 465 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8912 | 99.8550 | 99.9274 | 36.4538 | 2754 | 4 | 2754 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8830 | 99.8129 | 99.9531 | 76.9081 | 2134 | 4 | 2132 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | homalt | 98.4183 | 98.5915 | 98.2456 | 88.1645 | 280 | 4 | 280 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.9831 | 19 | 4 | 19 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | het | 84.4828 | 92.4528 | 77.7778 | 98.7390 | 49 | 4 | 49 | 14 | 1 | 7.1429 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | homalt | 97.2222 | 96.3303 | 98.1308 | 95.0256 | 105 | 4 | 105 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | homalt | 97.3684 | 96.5217 | 98.2301 | 95.4673 | 111 | 4 | 111 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.3913 | 96.5517 | 98.2456 | 95.5277 | 112 | 4 | 112 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1888 | 99.1803 | 95.2756 | 71.1364 | 484 | 4 | 484 | 24 | 19 | 79.1667 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8483 | 99.0025 | 98.6945 | 81.4707 | 397 | 4 | 378 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.6699 | 22 | 4 | 23 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.1818 | 22 | 4 | 24 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 81.6456 | 27 | 4 | 29 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7175 | 99.6237 | 99.8115 | 81.3892 | 1059 | 4 | 1059 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.1029 | 98.9446 | 89.7129 | 61.3321 | 375 | 4 | 375 | 43 | 43 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.4444 | 94.3662 | 61.4679 | 54.5833 | 67 | 4 | 67 | 42 | 42 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8327 | 98.4496 | 99.2188 | 83.8384 | 254 | 4 | 254 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 97.1338 | 9 | 4 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.9444 | 11 | 4 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 97.0027 | 11 | 4 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.0016 | 99.3355 | 87.4269 | 52.3677 | 598 | 4 | 598 | 86 | 85 | 98.8372 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8504 | 96.8504 | 96.8504 | 78.9037 | 123 | 4 | 123 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.1277 | 99.0847 | 86.0835 | 48.4103 | 433 | 4 | 433 | 70 | 70 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4310 | 99.4310 | 99.4310 | 47.4196 | 699 | 4 | 699 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 21.1864 | 93 | 4 | 93 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.8491 | 96.9466 | 94.7761 | 92.5431 | 127 | 4 | 127 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 92.4672 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9957 | 96.5812 | 97.4138 | 92.7318 | 113 | 4 | 113 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_siren | homalt | 97.6744 | 96.9231 | 98.4375 | 84.0796 | 126 | 4 | 126 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 84.9656 | 91.4894 | 79.3103 | 93.9959 | 43 | 4 | 23 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.0992 | 93.9394 | 98.3607 | 89.4646 | 62 | 4 | 60 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 74.0741 | 19 | 4 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7378 | 99.5812 | 99.8950 | 80.4517 | 951 | 4 | 951 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6218 | 92.1569 | 97.2222 | 94.3038 | 47 | 4 | 35 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4666 | 99.1489 | 99.7863 | 69.8065 | 466 | 4 | 467 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9750 | 44 | 4 | 45 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8553 | 95.0617 | 98.7179 | 79.5812 | 77 | 4 | 77 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.2500 | 48 | 4 | 49 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3734 | 97.4194 | 99.3464 | 82.9050 | 151 | 4 | 152 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5192 | 99.0431 | 100.0000 | 47.9245 | 414 | 4 | 414 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |