PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35651-35700 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m0_e0 | het | 61.5385 | 44.4444 | 100.0000 | 98.4733 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m0_e0 | homalt | 28.5714 | 16.6667 | 100.0000 | 97.8723 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m1_e0 | * | 44.4444 | 28.5714 | 100.0000 | 99.3750 | 2 | 5 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | * | 54.5455 | 37.5000 | 100.0000 | 99.1690 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | * | 54.5455 | 37.5000 | 100.0000 | 99.2063 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | * | 76.1905 | 61.5385 | 100.0000 | 70.3704 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 61.5385 | 44.4444 | 100.0000 | 99.2157 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 54.5455 | 37.5000 | 100.0000 | 99.2228 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | tech_badpromoters | het | 92.8571 | 88.6364 | 97.5000 | 65.2174 | 39 | 5 | 39 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7241 | 99.7700 | 99.6783 | 64.5024 | 2169 | 5 | 2169 | 7 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.2267 | 502 | 5 | 502 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5115 | 99.3179 | 97.7181 | 73.3548 | 728 | 5 | 728 | 17 | 13 | 76.4706 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6744 | 99.4583 | 99.8915 | 30.2044 | 918 | 5 | 921 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | * | 90.1235 | 93.5897 | 86.9048 | 97.9749 | 73 | 5 | 73 | 11 | 2 | 18.1818 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | homalt | 96.2963 | 95.4128 | 97.1963 | 95.1496 | 104 | 5 | 104 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | homalt | 96.4912 | 95.6522 | 97.3451 | 95.5424 | 110 | 5 | 110 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | homalt | 96.5217 | 95.6897 | 97.3684 | 95.6322 | 111 | 5 | 111 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2777 | 97.5124 | 95.0739 | 88.6465 | 196 | 5 | 193 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3932 | 99.3932 | 99.3932 | 71.3192 | 819 | 5 | 819 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.4993 | 99.5404 | 97.4797 | 67.4289 | 1083 | 5 | 1083 | 28 | 22 | 78.5714 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.7402 | 25 | 5 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8468 | 99.7812 | 99.9125 | 47.3260 | 2280 | 5 | 2283 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.4073 | 99.1554 | 99.6604 | 83.4225 | 587 | 5 | 587 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.4258 | 99.1817 | 99.6711 | 84.0629 | 606 | 5 | 606 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.4341 | 99.1935 | 99.6759 | 84.1347 | 615 | 5 | 615 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 90.6760 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | * | 99.5471 | 99.5467 | 99.5475 | 94.9619 | 1098 | 5 | 1100 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6017 | 99.5025 | 99.7012 | 65.7688 | 1000 | 5 | 1001 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.5600 | 98.4026 | 98.7179 | 33.7580 | 308 | 5 | 308 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | het | 97.6501 | 97.3958 | 97.9058 | 89.8727 | 187 | 5 | 187 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m0_e0 | het | 96.1905 | 95.2830 | 97.1154 | 93.1848 | 101 | 5 | 101 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | * | 94.8357 | 95.2830 | 94.3925 | 96.0149 | 101 | 5 | 101 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | * | 95.1542 | 95.5752 | 94.7368 | 96.3798 | 108 | 5 | 108 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | * | 95.1965 | 95.6140 | 94.7826 | 96.4691 | 109 | 5 | 109 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | hetalt | 97.7169 | 95.5357 | 100.0000 | 88.2029 | 107 | 5 | 107 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6131 | 93.8272 | 97.4684 | 73.9274 | 76 | 5 | 77 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3927 | 94.1176 | 98.7805 | 56.1497 | 80 | 5 | 81 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m0_e0 | * | 91.8033 | 84.8485 | 100.0000 | 90.6040 | 28 | 5 | 28 | 0 | 0 | ||