PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35501-35550 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8571 | 96.4789 | 99.2754 | 41.7722 | 137 | 5 | 137 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | het | 96.4143 | 96.0317 | 96.8000 | 86.3983 | 121 | 5 | 121 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | * | 97.3913 | 95.7265 | 99.1150 | 87.6096 | 112 | 5 | 112 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | het | 95.6522 | 92.9577 | 98.5075 | 89.2456 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | het | 95.6522 | 92.9577 | 98.5075 | 89.4155 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | het | 83.6199 | 89.3617 | 78.5714 | 93.1540 | 42 | 5 | 22 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7136 | 95.3704 | 98.0952 | 88.4995 | 103 | 5 | 103 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.7230 | 81.4815 | 95.0000 | 91.0714 | 22 | 5 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.3617 | 80.7692 | 100.0000 | 90.4110 | 21 | 5 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.5349 | 93.9024 | 85.5556 | 75.6098 | 77 | 5 | 77 | 13 | 13 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.3333 | 81.4815 | 66.6667 | 96.8750 | 22 | 5 | 2 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 90.6598 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | het | 90.1639 | 91.6667 | 88.7097 | 95.3662 | 55 | 5 | 55 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | het | 91.0448 | 92.4242 | 89.7059 | 95.7233 | 61 | 5 | 61 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | het | 91.0448 | 92.4242 | 89.7059 | 95.8838 | 61 | 5 | 61 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2025 | 93.8272 | 98.7013 | 76.2346 | 76 | 5 | 76 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5673 | 97.1751 | 100.0000 | 71.3333 | 172 | 5 | 172 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.9495 | 90.3846 | 100.0000 | 57.8947 | 47 | 5 | 48 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 90.4959 | 30 | 5 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | het | 82.7586 | 70.5882 | 100.0000 | 90.6977 | 12 | 5 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m0_e0 | het | 61.5385 | 44.4444 | 100.0000 | 95.7895 | 4 | 5 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e1 | het | 81.4815 | 68.7500 | 100.0000 | 94.1489 | 11 | 5 | 11 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.2222 | 95.4545 | 99.0566 | 90.3811 | 105 | 5 | 105 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.7586 | 70.5882 | 100.0000 | 97.2158 | 12 | 5 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | segdup | homalt | 99.7378 | 99.8456 | 99.6302 | 90.4939 | 3233 | 5 | 3233 | 12 | 12 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | decoy | * | 22.2222 | 16.6667 | 33.3333 | 98.5915 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 42.8571 | 37.5000 | 50.0000 | 25.0000 | 3 | 5 | 3 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.1860 | 98.0620 | 96.3255 | 87.0584 | 253 | 5 | 367 | 14 | 10 | 71.4286 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 72.7273 | 61.5385 | 88.8889 | 95.1872 | 8 | 5 | 16 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.7289 | 97.8070 | 97.6510 | 89.7805 | 223 | 5 | 291 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.8628 | 97.9339 | 97.7918 | 89.9684 | 237 | 5 | 310 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.7568 | 97.9839 | 97.5309 | 89.9783 | 243 | 5 | 316 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 58.8235 | 44.4444 | 86.9565 | 97.3714 | 4 | 5 | 20 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.9790 | 97.3958 | 30.0926 | 23.2227 | 187 | 5 | 195 | 453 | 421 | 92.9360 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | homalt | 76.3271 | 79.1667 | 73.6842 | 90.0262 | 19 | 5 | 28 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | homalt | 82.2909 | 80.7692 | 83.8710 | 91.6890 | 21 | 5 | 26 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | homalt | 81.3415 | 82.1429 | 80.5556 | 91.1330 | 23 | 5 | 29 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 61.5385 | 44.4444 | 100.0000 | 89.6552 | 4 | 5 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | homalt | 81.9113 | 82.7586 | 81.0811 | 91.0412 | 24 | 5 | 30 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | homalt | 71.4286 | 90.0000 | 59.2105 | 90.9524 | 45 | 5 | 45 | 31 | 30 | 96.7742 | |
| eyeh-varpipe | INDEL | I16_PLUS | func_cds | het | 61.5385 | 44.4444 | 100.0000 | 33.3333 | 4 | 5 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | het | 54.5455 | 37.5000 | 100.0000 | 64.2857 | 3 | 5 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | * | 27.2727 | 16.6667 | 75.0000 | 81.8182 | 1 | 5 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.2633 | 93.9024 | 34.3158 | 41.8605 | 77 | 5 | 163 | 312 | 287 | 91.9872 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 83.4862 | 73.6842 | 96.2963 | 92.3944 | 14 | 5 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 83.4862 | 73.6842 | 96.2963 | 92.5000 | 14 | 5 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | func_cds | het | 88.3721 | 79.1667 | 100.0000 | 29.6296 | 19 | 5 | 19 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | * | 75.2577 | 93.5897 | 62.9310 | 97.7692 | 73 | 5 | 73 | 43 | 2 | 4.6512 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||