PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35351-35400 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5913 | 99.8586 | 99.3255 | 71.8824 | 3532 | 5 | 3534 | 24 | 24 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6329 | 99.4764 | 99.7899 | 79.2908 | 950 | 5 | 950 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3590 | 98.9362 | 99.7854 | 67.0205 | 465 | 5 | 465 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 98.9891 | 99.0792 | 98.8991 | 83.0903 | 538 | 5 | 539 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 98.9224 | 98.4663 | 99.3827 | 84.2412 | 321 | 5 | 322 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.9697 | 94.1176 | 100.0000 | 53.1792 | 80 | 5 | 81 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3607 | 96.7742 | 100.0000 | 81.6176 | 150 | 5 | 150 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9079 | 95.9016 | 100.0000 | 58.5714 | 117 | 5 | 116 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 91.8750 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 94.8598 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 86.9565 | 80.0000 | 95.2381 | 93.9655 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 86.9565 | 80.0000 | 95.2381 | 94.6835 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 88.0000 | 81.4815 | 95.6522 | 94.4712 | 22 | 5 | 22 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 68.1481 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 77.1186 | 25 | 5 | 27 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9361 | 99.9509 | 99.9214 | 54.3780 | 10173 | 5 | 10173 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8250 | 99.7812 | 99.8688 | 48.1162 | 2280 | 5 | 2283 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 28.1005 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.2381 | 93.3333 | 97.2222 | 64.3564 | 70 | 5 | 70 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 25.4237 | 44 | 5 | 44 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 95.6731 | 9 | 5 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 94.0671 | 98.5507 | 89.9736 | 92.9238 | 340 | 5 | 341 | 38 | 1 | 2.6316 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.6726 | 97.8070 | 99.5536 | 87.8128 | 223 | 5 | 223 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.7500 | 97.9339 | 99.5798 | 88.4466 | 237 | 5 | 237 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.5801 | 97.9839 | 99.1837 | 88.3666 | 243 | 5 | 243 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 92.9972 | 97.0760 | 89.2473 | 96.8555 | 166 | 5 | 166 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 93.4726 | 97.2826 | 89.9497 | 97.0218 | 179 | 5 | 179 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 93.5065 | 97.2973 | 90.0000 | 97.0803 | 180 | 5 | 180 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | het | 95.2904 | 99.2775 | 91.6112 | 96.4890 | 687 | 5 | 688 | 63 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4785 | 99.4206 | 99.5365 | 64.1313 | 858 | 5 | 859 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.3728 | 84.8485 | 96.6667 | 61.5385 | 28 | 5 | 29 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.5116 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.8000 | 96.0317 | 97.5806 | 92.9785 | 121 | 5 | 121 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | * | homalt | 97.5243 | 99.6797 | 95.4601 | 72.0843 | 1556 | 5 | 1556 | 74 | 69 | 93.2432 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2617 | 95.3704 | 97.1698 | 89.5257 | 103 | 5 | 103 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2955 | 97.1910 | 99.4253 | 81.4499 | 173 | 5 | 173 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.7230 | 81.4815 | 95.0000 | 92.0635 | 22 | 5 | 19 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.7145 | 97.0238 | 96.4072 | 78.9673 | 163 | 5 | 161 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.3617 | 80.7692 | 100.0000 | 91.3934 | 21 | 5 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.0000 | 93.9024 | 82.7957 | 75.9690 | 77 | 5 | 77 | 16 | 16 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 89.7959 | 81.4815 | 100.0000 | 97.5207 | 22 | 5 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5638 | 99.6361 | 99.4916 | 74.0824 | 1369 | 5 | 1370 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 96.6800 | 98.3871 | 95.0311 | 92.5047 | 305 | 5 | 306 | 16 | 2 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 95.4250 | 97.3958 | 93.5323 | 94.0708 | 187 | 5 | 188 | 13 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 96.0815 | 97.1591 | 95.0276 | 94.8594 | 171 | 5 | 172 | 9 | 2 | 22.2222 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 96.1457 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 90.9091 | 91.6667 | 90.1639 | 98.1015 | 55 | 5 | 55 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 91.7293 | 92.4242 | 91.0448 | 98.1911 | 61 | 5 | 61 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 91.7293 | 92.4242 | 91.0448 | 98.2502 | 61 | 5 | 61 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | het | 93.2743 | 99.0706 | 88.1188 | 96.5876 | 533 | 5 | 534 | 72 | 0 | 0.0000 | |