PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35301-35350 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 78.4993 | 76.1905 | 80.9524 | 99.9062 | 16 | 5 | 17 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | homalt | 95.8084 | 94.1176 | 97.5610 | 87.9412 | 80 | 5 | 80 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | * | 90.1099 | 89.1304 | 91.1111 | 97.6923 | 41 | 5 | 41 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | HG002compoundhet | homalt | 13.4561 | 79.1667 | 7.3529 | 47.3888 | 19 | 5 | 20 | 252 | 231 | 91.6667 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 95.2670 | 37 | 5 | 39 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.1670 | 73.6842 | 92.8571 | 88.7097 | 14 | 5 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 89.3617 | 80.7692 | 100.0000 | 72.7273 | 21 | 5 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 89.3617 | 80.7692 | 100.0000 | 72.7273 | 21 | 5 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 88.3843 | 82.1429 | 95.6522 | 90.7631 | 23 | 5 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 82.6087 | 26 | 5 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | homalt | 90.6250 | 85.2941 | 96.6667 | 84.5361 | 29 | 5 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | * | 94.2529 | 89.1304 | 100.0000 | 95.2596 | 41 | 5 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | het | 91.8033 | 84.8485 | 100.0000 | 92.3483 | 28 | 5 | 29 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0769 | 97.6077 | 98.5507 | 70.1299 | 204 | 5 | 204 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4840 | 98.9733 | 100.0000 | 60.3521 | 482 | 5 | 473 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6680 | 98.1203 | 99.2218 | 79.3408 | 261 | 5 | 255 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6431 | 99.2888 | 100.0000 | 35.3991 | 698 | 5 | 688 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | homalt | 97.6500 | 96.1538 | 99.1935 | 78.0142 | 125 | 5 | 123 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 81.2500 | 72.2222 | 92.8571 | 70.2128 | 13 | 5 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 90.1961 | 82.1429 | 100.0000 | 54.1667 | 23 | 5 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.4815 | 68.7500 | 100.0000 | 75.0000 | 11 | 5 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 66.6667 | 54.5455 | 85.7143 | 78.1250 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 66.6667 | 54.5455 | 85.7143 | 85.4167 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | * | 94.3820 | 89.3617 | 100.0000 | 89.7311 | 42 | 5 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3863 | 99.1243 | 99.6497 | 55.8050 | 566 | 5 | 569 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7411 | 99.4835 | 100.0000 | 59.6808 | 963 | 5 | 960 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 90.3408 | 89.5833 | 91.1111 | 94.6492 | 43 | 5 | 41 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.9254 | 90.1961 | 91.6667 | 94.4380 | 46 | 5 | 44 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 75.4545 | 25 | 5 | 27 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 80.4196 | 26 | 5 | 28 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 28.6604 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 75.0000 | 64.2857 | 90.0000 | 95.1691 | 9 | 5 | 9 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3232 | 99.1554 | 99.4915 | 81.9902 | 587 | 5 | 587 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 82.7381 | 606 | 5 | 606 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3538 | 99.1935 | 99.5146 | 82.8286 | 615 | 5 | 615 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 96.7930 | 97.0760 | 96.5116 | 94.7673 | 166 | 5 | 166 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 97.0190 | 97.2826 | 96.7568 | 95.0508 | 179 | 5 | 179 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 97.0350 | 97.2973 | 96.7742 | 95.1360 | 180 | 5 | 180 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D1_5 | segdup | * | 99.5918 | 99.5467 | 99.6370 | 94.3313 | 1098 | 5 | 1098 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2112 | 96.0630 | 98.3871 | 74.4856 | 122 | 5 | 122 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 59.0551 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8571 | 96.4789 | 99.2754 | 41.7722 | 137 | 5 | 137 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7746 | 93.1507 | 98.5507 | 73.5632 | 68 | 5 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6190 | 96.0938 | 99.1935 | 89.4288 | 123 | 5 | 123 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.7959 | 81.4815 | 100.0000 | 90.4762 | 22 | 5 | 18 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 87.8049 | 78.2609 | 100.0000 | 75.0000 | 18 | 5 | 20 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3984 | 98.2332 | 94.6309 | 68.0258 | 278 | 5 | 282 | 16 | 15 | 93.7500 | |