PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34851-34900 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 97.6744 | 2 | 6 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.0233 | 98.3380 | 99.7183 | 57.9882 | 355 | 6 | 354 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.4812 | 86.9565 | 92.1569 | 51.8868 | 40 | 6 | 47 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 84.8574 | 86.9565 | 82.8571 | 91.8320 | 40 | 6 | 58 | 12 | 7 | 58.3333 | |
| cchapple-custom | INDEL | D16_PLUS | map_siren | het | 88.5508 | 92.3077 | 85.0877 | 91.8397 | 72 | 6 | 97 | 17 | 9 | 52.9412 | |
| cchapple-custom | INDEL | D16_PLUS | map_siren | homalt | 84.8485 | 82.3529 | 87.5000 | 89.0411 | 28 | 6 | 28 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.3538 | 98.9011 | 99.8106 | 72.2835 | 540 | 6 | 527 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 98.7013 | 0.0000 | 0.0000 | 456 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 87.2340 | 0.0000 | 0.0000 | 41 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 42 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 88.2353 | 0.0000 | 0.0000 | 45 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 94.2515 | 97.0297 | 91.6279 | 90.6318 | 196 | 6 | 197 | 18 | 2 | 11.1111 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2725 | 95.2756 | 99.3548 | 67.4370 | 121 | 6 | 154 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.4540 | 98.6270 | 88.7967 | 40.4203 | 431 | 6 | 428 | 54 | 54 | 100.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.5044 | 99.5907 | 91.7402 | 55.4244 | 1460 | 6 | 1455 | 131 | 24 | 18.3206 | |
| ciseli-custom | SNP | ti | map_l100_m0_e0 | hetalt | 69.5652 | 57.1429 | 88.8889 | 73.5294 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | tech_badpromoters | * | 86.2240 | 92.9412 | 80.4124 | 43.9306 | 79 | 6 | 78 | 19 | 1 | 5.2632 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 15.2009 | 76.9231 | 8.4337 | 82.7562 | 20 | 6 | 21 | 228 | 4 | 1.7544 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.7002 | 99.5423 | 94.0159 | 40.8529 | 1305 | 6 | 1304 | 83 | 22 | 26.5060 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.7161 | 93.1034 | 96.3855 | 99.8898 | 81 | 6 | 80 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.0057 | 37 | 6 | 37 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | HG002compoundhet | het | 93.6315 | 98.5185 | 89.2063 | 59.4595 | 399 | 6 | 281 | 34 | 31 | 91.1765 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7990 | 98.4375 | 95.2141 | 86.5241 | 378 | 6 | 378 | 19 | 2 | 10.5263 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0812 | 98.5037 | 97.6623 | 82.7122 | 395 | 6 | 376 | 9 | 3 | 33.3333 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.2099 | 99.2021 | 87.9004 | 61.3834 | 746 | 6 | 741 | 102 | 102 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5453 | 99.6109 | 99.4798 | 78.1348 | 1536 | 6 | 1530 | 8 | 5 | 62.5000 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.4375 | 97.6744 | 99.2126 | 83.3878 | 252 | 6 | 252 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 93.1818 | 87.2340 | 100.0000 | 90.0243 | 41 | 6 | 41 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.3153 | 42 | 6 | 43 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 93.7500 | 88.2353 | 100.0000 | 89.8901 | 45 | 6 | 46 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | * | 95.0825 | 96.4912 | 93.7143 | 95.4967 | 165 | 6 | 164 | 11 | 2 | 18.1818 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | * | 95.4265 | 96.7391 | 94.1489 | 95.7629 | 178 | 6 | 177 | 11 | 2 | 18.1818 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | * | 95.4509 | 96.7568 | 94.1799 | 95.8498 | 179 | 6 | 178 | 11 | 2 | 18.1818 | |
| ckim-dragen | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 89.8570 | 78 | 6 | 78 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.5750 | 99.7860 | 89.8811 | 59.7231 | 2798 | 6 | 2798 | 315 | 314 | 99.6825 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | * | 95.0980 | 94.1748 | 96.0396 | 90.6481 | 97 | 6 | 97 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 69.7561 | 62 | 6 | 62 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 71.0280 | 62 | 6 | 62 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 91.7278 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_siren | het | 97.8533 | 97.8571 | 97.8495 | 88.2378 | 274 | 6 | 273 | 6 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 74.0223 | 93 | 6 | 93 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.0874 | 94.3396 | 100.0000 | 86.5762 | 100 | 6 | 89 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.2575 | 99.0755 | 93.5953 | 68.1797 | 643 | 6 | 643 | 44 | 44 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5267 | 99.5633 | 99.4902 | 73.5096 | 1368 | 6 | 1366 | 7 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.8406 | 98.8417 | 98.8395 | 79.6936 | 512 | 6 | 511 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.8690 | 98.8701 | 98.8679 | 81.2057 | 525 | 6 | 524 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.8879 | 98.8889 | 98.8868 | 81.3172 | 534 | 6 | 533 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | het | 95.6938 | 94.3396 | 97.0874 | 93.7764 | 100 | 6 | 100 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m1_e0 | het | 90.7563 | 90.0000 | 91.5254 | 96.8177 | 54 | 6 | 54 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e0 | het | 91.6031 | 90.9091 | 92.3077 | 97.0252 | 60 | 6 | 60 | 5 | 0 | 0.0000 | |