PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34751-34800 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8417 | 95.7746 | 100.0000 | 36.3208 | 136 | 6 | 135 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | * | 95.0386 | 94.1748 | 95.9184 | 83.9607 | 97 | 6 | 94 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6000 | 95.3125 | 100.0000 | 86.1340 | 122 | 6 | 118 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 80.5139 | 93 | 6 | 91 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | segdup | * | 97.8692 | 96.8586 | 98.9011 | 91.2793 | 185 | 6 | 180 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 77.6119 | 66.6667 | 92.8571 | 66.6667 | 12 | 6 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.1292 | 82.8571 | 96.4286 | 74.5455 | 29 | 6 | 27 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.0000 | 88.6792 | 100.0000 | 59.8131 | 47 | 6 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.1830 | 87.2340 | 97.7273 | 64.2276 | 41 | 6 | 43 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 85.0000 | 73.9130 | 100.0000 | 77.7778 | 17 | 6 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 83.3333 | 10 | 6 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4772 | 97.0000 | 100.0000 | 56.4626 | 194 | 6 | 192 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4581 | 99.2238 | 97.7041 | 73.3786 | 767 | 6 | 766 | 18 | 3 | 16.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2979 | 98.9492 | 99.6491 | 52.9703 | 565 | 6 | 568 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6891 | 99.3802 | 100.0000 | 59.1393 | 962 | 6 | 959 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 98.1641 | 97.2350 | 99.1111 | 53.7037 | 211 | 6 | 223 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | * | 99.1958 | 99.4334 | 98.9593 | 93.1346 | 1053 | 6 | 1046 | 11 | 3 | 27.2727 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | het | 98.6887 | 98.8848 | 98.4934 | 93.5006 | 532 | 6 | 523 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.8276 | 90.1639 | 100.0000 | 55.6452 | 55 | 6 | 55 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.3899 | 96.1290 | 98.6842 | 79.5699 | 149 | 6 | 150 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1242 | 97.2222 | 99.0431 | 59.4175 | 210 | 6 | 207 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.1292 | 82.8571 | 96.4286 | 83.8150 | 29 | 6 | 27 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6562 | 96.0265 | 99.3421 | 59.0296 | 145 | 6 | 151 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | * | 90.0000 | 81.8182 | 100.0000 | 86.5672 | 27 | 6 | 27 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3488 | 99.7594 | 98.9416 | 60.6388 | 2488 | 6 | 2524 | 27 | 1 | 3.7037 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 80.0000 | 76.9231 | 83.3333 | 88.5714 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 80.0000 | 76.9231 | 83.3333 | 90.6977 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 80.0000 | 76.9231 | 83.3333 | 90.8397 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | hetalt | 74.3243 | 62.5000 | 91.6667 | 84.0000 | 10 | 6 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.3910 | 88.2353 | 77.2727 | 89.0547 | 45 | 6 | 34 | 10 | 2 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.1175 | 97.7528 | 98.4848 | 61.9048 | 261 | 6 | 260 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.3030 | 89.8305 | 72.6027 | 74.2049 | 53 | 6 | 53 | 20 | 19 | 95.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3630 | 92.5926 | 96.2025 | 76.1329 | 75 | 6 | 76 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.8885 | 97.4684 | 98.3122 | 25.4717 | 231 | 6 | 233 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | func_cds | * | 99.9384 | 99.9565 | 99.9202 | 22.0527 | 13781 | 6 | 13781 | 11 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.5714 | 64.7059 | 100.0000 | 96.3333 | 11 | 6 | 11 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | homalt | 53.8462 | 53.8462 | 53.8462 | 92.8571 | 7 | 6 | 7 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | segdup | homalt | 98.3264 | 98.3287 | 98.3240 | 93.5215 | 353 | 6 | 352 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.5612 | 96.1290 | 95.0000 | 81.4600 | 149 | 6 | 152 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | homalt | 57.1429 | 50.0000 | 66.6667 | 93.2836 | 6 | 6 | 6 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 78.7879 | 68.4211 | 92.8571 | 66.6667 | 13 | 6 | 13 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 78.7879 | 68.4211 | 92.8571 | 73.5849 | 13 | 6 | 13 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.7654 | 0 | 6 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 91.2621 | 88.6792 | 94.0000 | 70.4142 | 47 | 6 | 47 | 3 | 3 | 100.0000 | |