PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33951-34000 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5344 | 99.3802 | 99.6891 | 63.3219 | 962 | 6 | 962 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3415 | 92.9412 | 100.0000 | 56.2842 | 79 | 6 | 80 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 91.5663 | 86.3636 | 97.4359 | 74.3421 | 38 | 6 | 38 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1576 | 98.5646 | 99.7579 | 44.6381 | 412 | 6 | 412 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | het | 73.3333 | 64.7059 | 84.6154 | 91.5584 | 11 | 6 | 11 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | * | 69.2308 | 60.0000 | 81.8182 | 94.9309 | 9 | 6 | 9 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m1_e0 | * | 82.6087 | 76.0000 | 90.4762 | 93.9828 | 19 | 6 | 19 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e0 | * | 82.6087 | 76.0000 | 90.4762 | 94.6154 | 19 | 6 | 19 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | * | 84.0000 | 77.7778 | 91.3043 | 94.3902 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | * | func_cds | het | 99.9149 | 99.9462 | 99.8836 | 25.6262 | 11155 | 6 | 11152 | 13 | 3 | 23.0769 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2751 | 99.6037 | 98.9488 | 87.5654 | 1508 | 6 | 1506 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9507 | 99.9014 | 100.0000 | 54.7268 | 6082 | 6 | 6082 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1404 | 95.8042 | 96.4789 | 92.5654 | 137 | 6 | 137 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0297 | 94.1176 | 95.9596 | 92.6174 | 96 | 6 | 95 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7460 | 99.8094 | 99.6827 | 70.4841 | 3142 | 6 | 3142 | 10 | 6 | 60.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7923 | 99.6445 | 99.9406 | 65.1625 | 1682 | 6 | 1682 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9282 | 99.9043 | 99.9521 | 44.5722 | 6262 | 6 | 6262 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | HG002compoundhet | homalt | 99.7491 | 99.8229 | 99.6753 | 42.8668 | 3382 | 6 | 3377 | 11 | 9 | 81.8182 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5422 | 96.3636 | 98.7500 | 90.1356 | 159 | 6 | 158 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7660 | 99.5995 | 99.9330 | 82.3251 | 1492 | 6 | 1492 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.1064 | 76.9231 | 95.2381 | 96.3918 | 20 | 6 | 20 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | homalt | 99.9189 | 99.9189 | 99.9189 | 30.4421 | 7388 | 6 | 7388 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | func_cds | * | 99.8985 | 99.9565 | 99.8406 | 21.8782 | 13781 | 6 | 13779 | 22 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7543 | 99.5098 | 100.0000 | 58.1874 | 1218 | 6 | 1218 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3062 | 98.8166 | 99.8008 | 85.8631 | 501 | 6 | 501 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7326 | 99.5995 | 99.8661 | 79.1457 | 1492 | 6 | 1492 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.5714 | 64.7059 | 100.0000 | 97.4239 | 11 | 6 | 11 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.6608 | 99.5482 | 99.7736 | 73.0800 | 1322 | 6 | 1322 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | homalt | 99.4658 | 99.3597 | 99.5722 | 85.2640 | 931 | 6 | 931 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | homalt | 99.4709 | 99.3658 | 99.5763 | 85.3530 | 940 | 6 | 940 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | homalt | 98.7013 | 98.7013 | 98.7013 | 88.1081 | 456 | 6 | 456 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | homalt | 98.7526 | 98.7526 | 98.7526 | 89.0183 | 475 | 6 | 475 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | homalt | 98.6802 | 98.7805 | 98.5801 | 89.0274 | 486 | 6 | 486 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 97.1888 | 95.2756 | 99.1803 | 49.7942 | 121 | 6 | 121 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 86.3636 | 76.0000 | 100.0000 | 28.5714 | 19 | 6 | 20 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.2745 | 78.5714 | 95.6522 | 93.1751 | 22 | 6 | 22 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 86.4078 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | * | 84.0000 | 77.7778 | 91.3043 | 89.6396 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.0862 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 93.6879 | 91.8919 | 95.5556 | 85.9375 | 68 | 6 | 43 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 51.8072 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.0465 | 86.0465 | 86.0465 | 75.1445 | 37 | 6 | 37 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 69.2308 | 27 | 6 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.9519 | 83.7838 | 88.2353 | 61.3636 | 31 | 6 | 15 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.7133 | 96.8750 | 78.4810 | 46.7416 | 186 | 6 | 186 | 51 | 50 | 98.0392 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | het | 92.7976 | 90.0000 | 95.7746 | 84.8614 | 54 | 6 | 68 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | het | 94.5127 | 91.5493 | 97.6744 | 86.4139 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | het | 94.5127 | 91.5493 | 97.6744 | 86.6460 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | * | 95.0594 | 92.6829 | 97.5610 | 90.7240 | 76 | 6 | 80 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | func_cds | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 6 | 6 | 6 | 0 | 0 | ||