PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33801-33850 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.2779 | 97.9943 | 98.5632 | 89.1589 | 342 | 7 | 343 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.3490 | 98.0769 | 98.6226 | 89.6286 | 357 | 7 | 358 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.3846 | 98.1183 | 98.6523 | 89.5962 | 365 | 7 | 366 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.5756 | 96.9298 | 98.2301 | 91.3542 | 221 | 7 | 222 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.7165 | 97.1074 | 98.3333 | 91.6464 | 235 | 7 | 236 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.7720 | 97.1774 | 98.3740 | 91.5840 | 241 | 7 | 242 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | homalt | 3.3072 | 70.8333 | 1.6931 | 58.2597 | 17 | 7 | 16 | 929 | 928 | 99.8924 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | homalt | 79.0698 | 70.8333 | 89.4737 | 91.9831 | 17 | 7 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 78.7879 | 65.0000 | 100.0000 | 85.0000 | 13 | 7 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | het | 77.1875 | 65.0000 | 95.0000 | 85.9155 | 13 | 7 | 19 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | het | 46.1538 | 30.0000 | 100.0000 | 63.6364 | 3 | 7 | 4 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | homalt | 88.5246 | 79.4118 | 100.0000 | 84.2105 | 27 | 7 | 27 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e0 | homalt | 89.2308 | 80.5556 | 100.0000 | 84.8168 | 29 | 7 | 29 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | homalt | 86.2745 | 75.8621 | 100.0000 | 86.2500 | 22 | 7 | 22 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 59.2593 | 53.3333 | 66.6667 | 87.5000 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 59.2593 | 53.3333 | 66.6667 | 88.9908 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | * | 59.2593 | 53.3333 | 66.6667 | 89.0909 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_siren | het | 73.0435 | 85.7143 | 63.6364 | 80.1205 | 42 | 7 | 42 | 24 | 23 | 95.8333 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 91.8644 | 98.7250 | 85.8954 | 82.3891 | 542 | 7 | 542 | 89 | 85 | 95.5056 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | het | 93.1419 | 97.6589 | 89.0244 | 93.6692 | 292 | 7 | 292 | 36 | 9 | 25.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.2010 | 96.4646 | 97.9487 | 82.7586 | 191 | 7 | 191 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e0 | het | 93.0663 | 97.7346 | 88.8235 | 94.2157 | 302 | 7 | 302 | 38 | 9 | 23.6842 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.2431 | 96.5174 | 97.9798 | 85.0114 | 194 | 7 | 194 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | het | 93.0931 | 97.7918 | 88.8252 | 94.2352 | 310 | 7 | 310 | 39 | 9 | 23.0769 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | homalt | 97.2840 | 96.5686 | 98.0100 | 85.1661 | 197 | 7 | 197 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | * | 91.2442 | 93.3962 | 89.1892 | 97.0217 | 99 | 7 | 99 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | * | 90.9871 | 93.8053 | 88.3333 | 97.2515 | 106 | 7 | 106 | 14 | 4 | 28.5714 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | * | 91.0638 | 93.8596 | 88.4298 | 97.3206 | 107 | 7 | 107 | 14 | 4 | 28.5714 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | * | 83.7209 | 83.7209 | 83.7209 | 37.6812 | 36 | 7 | 36 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 82.8571 | 80.5556 | 85.2941 | 66.0000 | 29 | 7 | 29 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | het | 80.0000 | 88.1356 | 73.2394 | 89.4659 | 52 | 7 | 52 | 19 | 15 | 78.9474 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 59.2593 | 53.3333 | 66.6667 | 95.5720 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.9655 | 74.0741 | 64.5161 | 97.5180 | 20 | 7 | 20 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | SNP | * | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.5502 | 99.5139 | 91.8902 | 78.2560 | 1433 | 7 | 1439 | 127 | 7 | 5.5118 | |
| ghariani-varprowl | SNP | tv | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 18.7500 | 30.0000 | 13.6364 | 98.7945 | 3 | 7 | 3 | 19 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | tech_badpromoters | homalt | 90.1408 | 82.0513 | 100.0000 | 62.3529 | 32 | 7 | 32 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | decoy | * | 40.5405 | 30.0000 | 62.5000 | 99.9717 | 3 | 7 | 5 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | * | 73.1479 | 91.0256 | 61.1399 | 97.2779 | 71 | 7 | 118 | 75 | 15 | 20.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | het | 20.0000 | 12.5000 | 50.0000 | 77.7778 | 1 | 7 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.7447 | 92.7835 | 98.9011 | 20.8696 | 90 | 7 | 90 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002compoundhet | homalt | 90.7042 | 97.8723 | 84.5144 | 83.9037 | 322 | 7 | 322 | 59 | 58 | 98.3051 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | hetalt | 95.4545 | 93.7500 | 97.2222 | 89.4325 | 105 | 7 | 105 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | homalt | 99.5047 | 99.4224 | 99.5871 | 77.9738 | 1205 | 7 | 1206 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | segdup | het | 98.7928 | 98.6989 | 98.8868 | 94.8759 | 531 | 7 | 533 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.5056 | 92.3913 | 98.8372 | 69.0647 | 85 | 7 | 85 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | het | 83.6364 | 76.6667 | 92.0000 | 89.6266 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | het | 83.6364 | 76.6667 | 92.0000 | 90.6015 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | het | 83.6364 | 76.6667 | 92.0000 | 90.8425 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |