PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33501-33550 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | func_cds | * | 87.9743 | 83.7209 | 92.6829 | 46.7532 | 36 | 7 | 38 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 34.9475 | 95.6522 | 21.3793 | 16.5708 | 154 | 7 | 155 | 570 | 530 | 92.9825 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | * | 87.7092 | 85.1064 | 90.4762 | 90.8828 | 40 | 7 | 57 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | * | 51.3761 | 36.3636 | 87.5000 | 70.3704 | 4 | 7 | 7 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 83.4783 | 85.7143 | 81.3559 | 70.4013 | 42 | 7 | 144 | 33 | 30 | 90.9091 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 95.9350 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | * | 58.8235 | 41.6667 | 100.0000 | 72.2222 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 78.7879 | 65.0000 | 100.0000 | 60.6061 | 13 | 7 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m0_e0 | het | 22.2222 | 12.5000 | 100.0000 | 98.1132 | 1 | 7 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | func_cds | homalt | 96.9697 | 94.1176 | 100.0000 | 31.2883 | 112 | 7 | 112 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0513 | 69.5652 | 100.0000 | 20.0000 | 16 | 7 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | homalt | 29.0909 | 77.4194 | 17.9104 | 80.8845 | 24 | 7 | 24 | 110 | 96 | 87.2727 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 63.1579 | 46.1538 | 100.0000 | 78.5714 | 6 | 7 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 58.8235 | 41.6667 | 100.0000 | 61.5385 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m0_e0 | het | 74.0741 | 58.8235 | 100.0000 | 97.1671 | 10 | 7 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 93.2432 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 81.0811 | 68.1818 | 100.0000 | 88.8889 | 15 | 7 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 81.0811 | 68.1818 | 100.0000 | 89.9329 | 15 | 7 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 81.0811 | 68.1818 | 100.0000 | 90.3846 | 15 | 7 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 46.1538 | 30.0000 | 100.0000 | 99.5957 | 3 | 7 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.3871 | 1 | 7 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | tech_badpromoters | homalt | 90.1408 | 82.0513 | 100.0000 | 58.4416 | 32 | 7 | 32 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.0000 | 65.0000 | 65.0000 | 99.6383 | 13 | 7 | 13 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 75.2137 | 86.2745 | 66.6667 | 57.1429 | 44 | 7 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | * | 82.3529 | 75.0000 | 91.3043 | 90.1709 | 21 | 7 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | het | 87.4904 | 81.0811 | 95.0000 | 89.3899 | 30 | 7 | 38 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.0110 | 96.4467 | 80.9322 | 61.2479 | 190 | 7 | 191 | 45 | 38 | 84.4444 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1521 | 98.8176 | 99.4889 | 84.7770 | 585 | 7 | 584 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.1786 | 98.8543 | 99.5050 | 85.3976 | 604 | 7 | 603 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | het | 95.8231 | 96.5347 | 95.1220 | 90.2334 | 195 | 7 | 195 | 10 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.8400 | 95.4839 | 98.2353 | 80.5714 | 148 | 7 | 167 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.5379 | 70.8333 | 98.8764 | 33.5821 | 17 | 7 | 88 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6014 | 91.7647 | 97.6190 | 90.6977 | 78 | 7 | 82 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m0_e0 | * | 53.3333 | 36.3636 | 100.0000 | 83.3333 | 4 | 7 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | HG002compoundhet | homalt | 52.2901 | 97.8723 | 35.6751 | 79.4310 | 322 | 7 | 325 | 586 | 578 | 98.6348 | |
| gduggal-bwafb | INDEL | I6_15 | func_cds | * | 90.0000 | 83.7209 | 97.2973 | 35.0877 | 36 | 7 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7199 | 99.5649 | 99.8753 | 57.4423 | 1602 | 7 | 1602 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | func_cds | * | 99.6673 | 99.9492 | 99.3869 | 27.6810 | 13780 | 7 | 13780 | 85 | 2 | 2.3529 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7052 | 99.8278 | 99.5828 | 48.0230 | 4058 | 7 | 4058 | 17 | 5 | 29.4118 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7273 | 99.6820 | 99.7726 | 43.0753 | 2194 | 7 | 2194 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7607 | 99.5225 | 100.0000 | 43.1975 | 1459 | 7 | 1478 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.5768 | 56.2500 | 84.6154 | 95.9248 | 9 | 7 | 11 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.6667 | 82.9268 | 100.0000 | 88.6861 | 34 | 7 | 31 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2481 | 98.5075 | 100.0000 | 78.1553 | 462 | 7 | 450 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | func_cds | * | 98.6486 | 98.4270 | 98.8713 | 35.8900 | 438 | 7 | 438 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 56.2500 | 81.8182 | 99.8908 | 9 | 7 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0995 | 86.0000 | 35.3448 | 60.4096 | 43 | 7 | 41 | 75 | 74 | 98.6667 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | hetalt | 33.3333 | 22.2222 | 66.6667 | 92.5000 | 2 | 7 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1485 | 96.6825 | 97.6190 | 55.2239 | 204 | 7 | 205 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 58.8235 | 41.6667 | 100.0000 | 70.3704 | 5 | 7 | 8 | 0 | 0 | ||