PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
3301-3350 / 86044 show all
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
93.9157
91.6952
96.2464
33.3267
22502203822436875753
86.0571
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
25.8333
23.3145
28.9623
64.4415
619203661415061481
98.3400
anovak-vgSNPtimap_l125_m2_e1homalt
90.0123
82.2569
99.3822
67.2869
9425203393305853
91.3793
anovak-vgSNPtimap_l125_m2_e0homalt
89.9353
82.1183
99.3971
67.3107
9327203192335651
91.0714
anovak-vgINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
14.1589
0.0000
0.0000
3352031000
gduggal-snapfbSNP*HG002complexvarhet
98.8655
99.5639
98.1768
21.9725
46347020304642358621899
10.4280
gduggal-snapplatINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
51.0807
34.9679
94.7321
49.3900
1091202910615945
76.2712
eyeh-varpipeINDELI1_5*het
97.6534
97.4342
97.8735
52.4121
7701320287690916711507
90.1855
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
91.5338
92.8273
90.2759
58.4295
2623320272618028201567
55.5674
asubramanian-gatkINDEL*HG002compoundhet*
93.4362
93.2377
93.6356
65.8907
2793420262783618921575
83.2452
egarrison-hhgaINDEL**het
97.8735
98.9564
96.8141
57.0135
192107202619318163575653
88.9256
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
78.1600
65.8800
96.0669
59.7785
39082024390816048
30.0000
gduggal-snapfbINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
56.0716
49.9257
63.9431
62.6651
2017202335061977448
22.6606
gduggal-snapfbSNPtv**
98.8423
99.7914
97.9112
28.0235
967675202396803620652782
3.7866
gduggal-bwavardSNPtimap_sirenhet
96.4374
96.7603
96.1167
68.4382
603612021598492418250
10.3391
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
37.9488
23.6006
96.7984
42.1136
624202014214747
100.0000
anovak-vgINDEL*HG002compoundhethet
52.7411
50.6595
55.0010
54.9014
2074202013874113517959
70.1172
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3588
95.3386
99.4664
56.7621
41315202041569223143
64.1256
gduggal-snapplatSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
93.4411
88.2459
99.2862
62.0370
1515820191516210922
20.1835
hfeng-pmm3SNP***
99.9548
99.9339
99.9756
18.3516
30526012018305246074476
10.2151
gduggal-snapvardSNP*map_sirenhomalt
98.0593
96.3449
99.8358
52.8740
531402016522958667
77.9070
eyeh-varpipeINDEL*HG002complexvarhetalt
61.1209
45.5799
92.7426
76.1697
168620133642285277
97.1930
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.4169
95.5954
72.4316
76.0055
4368920134398716742965
5.7640
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.4169
95.5954
72.4316
76.0055
4368920134398716742965
5.7640
anovak-vgSNP*map_l150_m2_e1het
76.0838
90.1144
65.8336
81.6880
1835020131814994192135
22.6669
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
82.8097
70.7958
99.7345
26.8052
4875201148831313
100.0000
jmaeng-gatkSNP*map_l250_m1_e0het
72.0683
57.7077
95.9441
96.8258
2744201127441168
6.8966
anovak-vgSNPtvmap_l125_m1_e0*
80.6396
87.4563
74.8088
74.7170
1400720091398447091051
22.3190
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
61.5928
47.2536
88.4257
46.3421
179820071803236207
87.7119
anovak-vgSNPtimap_l125_m1_e0homalt
89.7681
81.8379
99.4000
64.4522
9039200689465449
90.7407
anovak-vgSNP*map_l150_m2_e0het
75.9821
90.0512
65.7151
81.6508
1813020031793393562121
22.6699
ckim-gatkSNP*map_l250_m1_e0het
72.2025
57.8759
95.9554
96.7153
2752200327521169
7.7586
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
26.5124
15.4269
94.2105
53.3742
36520013582217
77.2727
ckim-gatkSNPtvmap_l125_m2_e1het
87.8849
81.0480
95.9816
88.0637
85532000855135815
4.1899
qzeng-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
79.5976
80.1449
79.0576
60.6684
807320001075528491405
49.3155
mlin-fermikitINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
82.6836
70.6547
99.6488
33.9430
4813199948231717
100.0000
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.7831
96.8990
98.6834
73.3610
62433199863262844717
84.9526
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
34.1360
27.5399
44.8870
36.7812
75919978341024846
82.6172
ckim-gatkSNPtvmap_l125_m2_e0het
87.7913
80.8849
95.9873
88.0575
84461996844435314
3.9660
qzeng-customINDELD6_15**
90.6408
92.3501
88.9936
51.4321
2409619962541331431242
39.5164
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
78.7301
78.1671
79.3012
91.5881
713919947172187298
5.2350
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
78.7301
78.1671
79.3012
91.5881
713919947172187298
5.2350
jpowers-varprowlINDELD16_PLUSHG002compoundhet*
17.0370
14.9082
19.8751
36.5405
349199235014111404
99.5039
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
30.1806
24.9718
38.1353
46.7618
663199295315461250
80.8538
anovak-vgINDEL*map_siren*
72.9885
73.1309
72.8467
79.6324
54191991548920461378
67.3509
anovak-vgINDELI16_PLUSHG002compoundhet*
11.6860
7.0929
33.1593
41.3476
1521991127256126
49.2188
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
79.2227
71.1825
89.3103
43.3419
491819914921589580
98.4720
ckim-gatkSNPtvmap_l125_m1_e0het
87.4351
80.3377
95.9080
87.2955
81351991813334714
4.0346
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
55.8462
84.1067
41.8008
48.8238
105311990105941475014683
99.5458
gduggal-bwavardINDELD16_PLUSHG002compoundhet*
17.4062
15.1645
20.4258
36.2202
355198635513831372
99.2046