PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33301-33350 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | het | 57.1429 | 53.3333 | 61.5385 | 94.3723 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | het | 57.1429 | 53.3333 | 61.5385 | 95.0758 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | * | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4919 | 99.8244 | 97.1944 | 47.1301 | 3980 | 7 | 3984 | 115 | 58 | 50.4348 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.9694 | 99.9307 | 96.0837 | 66.5958 | 10090 | 7 | 10108 | 412 | 277 | 67.2330 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.1120 | 99.2341 | 97.0149 | 76.5207 | 907 | 7 | 910 | 28 | 1 | 3.5714 | |
| jpowers-varprowl | SNP | tv | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7905 | 99.6747 | 99.9066 | 41.3311 | 2145 | 7 | 2140 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7732 | 99.6038 | 99.9432 | 61.2967 | 1760 | 7 | 1760 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 72.0000 | 56.2500 | 100.0000 | 93.2331 | 9 | 7 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 98.3051 | 2 | 7 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l250_m0_e0 | * | 91.6129 | 91.0256 | 92.2078 | 98.2130 | 71 | 7 | 71 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | * | tech_badpromoters | het | 74.4186 | 82.0513 | 68.0851 | 50.5263 | 32 | 7 | 32 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 69.5652 | 53.3333 | 100.0000 | 98.5841 | 8 | 7 | 8 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4375 | 9 | 7 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4402 | 9 | 7 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.7692 | 75.0000 | 87.5000 | 98.3146 | 21 | 7 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9505 | 99.9307 | 99.9703 | 51.1679 | 10095 | 7 | 10095 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | homalt | 99.5025 | 99.5644 | 99.4406 | 86.8749 | 1600 | 7 | 1600 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | homalt | 99.5429 | 99.5998 | 99.4860 | 87.7706 | 1742 | 7 | 1742 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e1 | homalt | 99.5488 | 99.6050 | 99.4927 | 87.8092 | 1765 | 7 | 1765 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.1204 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | het | 97.3854 | 97.9472 | 96.8300 | 91.4173 | 334 | 7 | 336 | 11 | 1 | 9.0909 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4522 | 99.1505 | 99.7558 | 69.0710 | 817 | 7 | 817 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.0103 | 95.8580 | 64.3564 | 80.8712 | 162 | 7 | 65 | 36 | 36 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6697 | 99.3415 | 100.0000 | 79.4752 | 1056 | 7 | 1056 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.2193 | 97.7419 | 98.7013 | 87.8357 | 303 | 7 | 304 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m0_e0 | het | 97.8850 | 96.3542 | 99.4652 | 88.8955 | 185 | 7 | 186 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 91.1765 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 86.2338 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | het | 93.1034 | 88.5246 | 98.1818 | 86.9048 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e1 | het | 93.1034 | 88.5246 | 98.1818 | 87.2093 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 91.0448 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e0 | het | 85.1852 | 76.6667 | 95.8333 | 92.0000 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e1 | het | 85.1852 | 76.6667 | 95.8333 | 92.1824 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 95.2273 | 20 | 7 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | func_cds | * | 99.9366 | 99.9614 | 99.9119 | 23.2953 | 18143 | 7 | 18140 | 16 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | HG002compoundhet | homalt | 99.8229 | 99.7934 | 99.8523 | 42.7460 | 3381 | 7 | 3381 | 5 | 5 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.3430 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | het | 96.5459 | 97.9472 | 95.1841 | 92.9709 | 334 | 7 | 336 | 17 | 1 | 5.8824 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5017 | 97.5265 | 93.5593 | 68.9474 | 276 | 7 | 276 | 19 | 19 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 95.9835 | 98.7109 | 93.4028 | 88.9103 | 536 | 7 | 538 | 38 | 3 | 7.8947 | |
| jlack-gatk | INDEL | I1_5 | map_siren | homalt | 99.3823 | 99.4224 | 99.3421 | 78.6217 | 1205 | 7 | 1208 | 8 | 5 | 62.5000 | |
| jlack-gatk | INDEL | I1_5 | segdup | het | 91.7231 | 98.6989 | 85.6683 | 96.3967 | 531 | 7 | 532 | 89 | 1 | 1.1236 | |
| jlack-gatk | INDEL | I6_15 | HG002compoundhet | het | 73.9198 | 96.6346 | 59.8513 | 81.3194 | 201 | 7 | 161 | 108 | 105 | 97.2222 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.7055 | 91.7647 | 100.0000 | 59.8985 | 78 | 7 | 79 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 92.6407 | 93.8596 | 91.4530 | 88.9934 | 107 | 7 | 107 | 10 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 92.7660 | 93.9655 | 91.5966 | 89.8029 | 109 | 7 | 109 | 10 | 0 | 0.0000 | |