PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33001-33050 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | * | map_l125_m0_e0 | homalt | 96.8008 | 97.1831 | 96.4215 | 89.3815 | 276 | 8 | 485 | 18 | 16 | 88.8889 | |
| eyeh-varpipe | INDEL | * | tech_badpromoters | * | 91.9970 | 89.4737 | 94.6667 | 86.9110 | 68 | 8 | 71 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.1064 | 74.0741 | 100.0000 | 88.3721 | 20 | 7 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.1111 | 97.3783 | 98.8550 | 62.7841 | 260 | 7 | 259 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | het | 98.1538 | 97.8528 | 98.4568 | 86.6831 | 319 | 7 | 319 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | homalt | 99.3814 | 99.4224 | 99.3405 | 78.4317 | 1205 | 7 | 1205 | 8 | 4 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.9227 | 92.3913 | 95.5056 | 68.1004 | 85 | 7 | 85 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | * | * | hetalt | 99.1394 | 99.1963 | 99.0826 | 48.4024 | 864 | 7 | 864 | 8 | 8 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6740 | 99.4939 | 99.8549 | 58.0900 | 1376 | 7 | 1376 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8538 | 99.7443 | 99.9634 | 32.0149 | 2731 | 7 | 2732 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | segdup | homalt | 99.8003 | 99.9067 | 99.6942 | 88.4424 | 7498 | 7 | 7498 | 23 | 23 | 100.0000 | |
| egarrison-hhga | SNP | tv | * | hetalt | 99.1394 | 99.1963 | 99.0826 | 48.4024 | 864 | 7 | 864 | 8 | 8 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8929 | 99.1813 | 98.6063 | 58.3656 | 848 | 7 | 849 | 12 | 3 | 25.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7216 | 99.5139 | 99.9303 | 67.9123 | 1433 | 7 | 1433 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | het | 96.2782 | 96.3158 | 96.2406 | 94.6853 | 183 | 7 | 256 | 10 | 4 | 40.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | het | 96.4428 | 96.6667 | 96.2199 | 94.7821 | 203 | 7 | 280 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | het | 96.4506 | 96.6825 | 96.2199 | 94.9010 | 204 | 7 | 280 | 11 | 5 | 45.4545 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 55.2147 | 41.6667 | 81.8182 | 76.5957 | 5 | 7 | 9 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 64.0000 | 53.3333 | 80.0000 | 81.4815 | 8 | 7 | 8 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 91.5663 | 84.4444 | 100.0000 | 50.0000 | 38 | 7 | 38 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 98.5507 | 0 | 7 | 0 | 1 | 0 | 0.0000 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 98.1818 | 0 | 7 | 0 | 1 | 0 | 0.0000 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 81.4815 | 5 | 7 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 69.7183 | 56.2500 | 91.6667 | 74.4681 | 9 | 7 | 11 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | segdup | hetalt | 92.1348 | 85.4167 | 100.0000 | 94.7165 | 41 | 7 | 41 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | func_cds | * | 91.1392 | 83.7209 | 100.0000 | 33.3333 | 36 | 7 | 36 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 58.8235 | 41.6667 | 100.0000 | 57.1429 | 5 | 7 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.8057 | 94.4882 | 76.9231 | 49.6774 | 120 | 7 | 120 | 36 | 30 | 83.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.2451 | 91.9540 | 98.7805 | 76.3006 | 80 | 7 | 81 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.0594 | 93.1373 | 95.0000 | 59.1837 | 95 | 7 | 95 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | het | 96.2963 | 96.5347 | 96.0591 | 91.1354 | 195 | 7 | 195 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4599 | 98.5626 | 98.3573 | 64.0590 | 480 | 7 | 479 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 88.0965 | 85.1064 | 91.3043 | 75.1351 | 40 | 7 | 42 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.7143 | 75.0000 | 100.0000 | 56.0000 | 21 | 7 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9524 | 70.8333 | 94.4444 | 73.9130 | 17 | 7 | 17 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 97.8723 | 1 | 7 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | segdup | hetalt | 91.5663 | 84.4444 | 100.0000 | 88.0126 | 38 | 7 | 38 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 42.8571 | 30.0000 | 75.0000 | 98.2143 | 3 | 7 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.3117 | 82.9268 | 94.4444 | 87.1429 | 34 | 7 | 34 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.5161 | 58.8235 | 71.4286 | 94.8529 | 10 | 7 | 10 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.4968 | 94.3548 | 96.6667 | 99.9204 | 117 | 7 | 116 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 93.5396 | 91.9540 | 95.1807 | 99.8965 | 80 | 7 | 79 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.1053 | 94.3548 | 95.8678 | 99.9213 | 117 | 7 | 116 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 93.5396 | 91.9540 | 95.1807 | 99.8985 | 80 | 7 | 79 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2903 | 98.1771 | 96.4194 | 86.0507 | 377 | 7 | 377 | 14 | 2 | 14.2857 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4903 | 97.8659 | 99.1228 | 38.1555 | 321 | 7 | 339 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_siren | * | 92.1664 | 95.1049 | 89.4040 | 94.7129 | 136 | 7 | 135 | 16 | 2 | 12.5000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7153 | 99.8632 | 97.5936 | 51.6484 | 5110 | 7 | 5110 | 126 | 125 | 99.2063 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3482 | 99.9034 | 98.7991 | 36.8548 | 7240 | 7 | 7240 | 88 | 87 | 98.8636 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8773 | 99.8283 | 99.9264 | 44.0264 | 4070 | 7 | 4073 | 3 | 1 | 33.3333 | |