PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32401-32450 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7576 | 99.6772 | 99.8383 | 36.6060 | 2470 | 8 | 2469 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 82.3529 | 72.4138 | 95.4545 | 87.4286 | 21 | 8 | 21 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 83.0189 | 73.3333 | 95.6522 | 88.2653 | 22 | 8 | 22 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 83.6364 | 74.1935 | 95.8333 | 87.8173 | 23 | 8 | 23 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.4058 | 16 | 8 | 16 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4192 | 16 | 8 | 16 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4192 | 16 | 8 | 16 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | homalt | 87.8788 | 78.3784 | 100.0000 | 84.8168 | 29 | 8 | 29 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 56.0000 | 46.6667 | 70.0000 | 83.8710 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 56.0000 | 46.6667 | 70.0000 | 86.4865 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | * | 56.0000 | 46.6667 | 70.0000 | 86.6667 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.5610 | 96.1538 | 99.0099 | 73.5602 | 200 | 8 | 200 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.1111 | 100.0000 | 1 | 8 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | het | 62.0690 | 52.9412 | 75.0000 | 93.5135 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 56.0000 | 46.6667 | 70.0000 | 94.1176 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 55.1724 | 50.0000 | 61.5385 | 95.2727 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | ti | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 78.5332 | 98.1982 | 65.4303 | 85.7535 | 436 | 8 | 441 | 233 | 107 | 45.9227 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.9799 | 99.5261 | 87.2417 | 71.6212 | 1680 | 8 | 1689 | 247 | 126 | 51.0121 | |
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.5568 | 93.9394 | 99.3243 | 87.0289 | 124 | 8 | 147 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.6154 | 95.1515 | 98.1250 | 91.0814 | 157 | 8 | 157 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.0690 | 52.9412 | 75.0000 | 99.6461 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 60.2273 | 86.8852 | 46.0870 | 64.8318 | 53 | 8 | 53 | 62 | 60 | 96.7742 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 76.9231 | 71.4286 | 83.3333 | 98.3039 | 20 | 8 | 20 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m0_e0 | homalt | 96.5517 | 94.5946 | 98.5915 | 83.6217 | 140 | 8 | 140 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | func_cds | * | 85.3659 | 81.3953 | 89.7436 | 54.6512 | 35 | 8 | 35 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9825 | 86.8852 | 100.0000 | 58.9147 | 53 | 8 | 53 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | hetalt | 94.1176 | 88.8889 | 100.0000 | 80.5970 | 64 | 8 | 65 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8848 | 99.7965 | 97.9897 | 57.5988 | 3923 | 8 | 3997 | 82 | 1 | 1.2195 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | homalt | 99.6262 | 99.5022 | 99.7505 | 86.3540 | 1599 | 8 | 1599 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | homalt | 99.6280 | 99.5426 | 99.7136 | 87.3322 | 1741 | 8 | 1741 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | homalt | 99.6047 | 99.5485 | 99.6610 | 87.3743 | 1764 | 8 | 1764 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2308 | 98.4733 | 100.0000 | 63.6671 | 516 | 8 | 537 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2318 | 98.9924 | 99.4723 | 85.2271 | 786 | 8 | 754 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | homalt | 99.7971 | 99.6398 | 99.9548 | 70.1295 | 2213 | 8 | 2213 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m0_e0 | * | 93.3679 | 89.7436 | 97.2973 | 95.4037 | 70 | 8 | 72 | 2 | 0 | 0.0000 | |
| jli-custom | SNP | * | func_cds | * | 99.9036 | 99.9559 | 99.8514 | 23.3699 | 18142 | 8 | 18142 | 27 | 0 | 0.0000 | |
| jli-custom | SNP | * | map_l250_m0_e0 | homalt | 98.9641 | 98.7281 | 99.2013 | 90.2386 | 621 | 8 | 621 | 5 | 5 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6313 | 99.3464 | 99.9178 | 60.7293 | 1216 | 8 | 1216 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.4273 | 99.5631 | 99.2919 | 54.6106 | 1823 | 8 | 1823 | 13 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8135 | 99.6690 | 99.9585 | 74.2163 | 2409 | 8 | 2409 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.4673 | 92.0792 | 94.8980 | 93.3106 | 93 | 8 | 93 | 5 | 3 | 60.0000 | |
| jli-custom | SNP | ti | segdup | homalt | 99.9200 | 99.8934 | 99.9467 | 87.3710 | 7497 | 8 | 7497 | 4 | 4 | 100.0000 | |