PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32351-32400 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.0751 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.6062 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.4155 | 93.4426 | 93.3884 | 74.3100 | 114 | 8 | 113 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 85.7143 | 77.1429 | 96.4286 | 65.8537 | 27 | 8 | 27 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.6977 | 82.9787 | 100.0000 | 65.2174 | 39 | 8 | 40 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 78.9474 | 65.2174 | 100.0000 | 80.0000 | 15 | 8 | 16 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.5672 | 78.3784 | 96.6667 | 70.5882 | 29 | 8 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0917 | 98.9651 | 99.2188 | 73.5537 | 765 | 8 | 762 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3191 | 99.1623 | 99.4764 | 77.1586 | 947 | 8 | 950 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2265 | 98.7673 | 99.6899 | 57.2281 | 641 | 8 | 643 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.6087 | 70.3704 | 100.0000 | 76.4045 | 19 | 8 | 21 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8616 | 98.0050 | 99.7333 | 77.0080 | 393 | 8 | 374 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 89.9123 | 83.3333 | 97.6190 | 91.8605 | 40 | 8 | 41 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8687 | 99.7876 | 97.9666 | 56.5178 | 3758 | 8 | 3758 | 78 | 76 | 97.4359 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6069 | 99.7147 | 97.5235 | 50.6371 | 2796 | 8 | 2796 | 71 | 71 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7488 | 99.7472 | 97.7702 | 52.2408 | 3157 | 8 | 3157 | 72 | 71 | 98.6111 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8687 | 99.7876 | 97.9666 | 56.5178 | 3758 | 8 | 3758 | 78 | 76 | 97.4359 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 91.6059 | 85.9649 | 98.0392 | 99.3838 | 49 | 8 | 50 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 88.3117 | 80.9524 | 97.1429 | 99.2233 | 34 | 8 | 34 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.8637 | 96.0976 | 95.6311 | 88.8829 | 197 | 8 | 197 | 9 | 5 | 55.5556 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.8637 | 96.0976 | 95.6311 | 88.8829 | 197 | 8 | 197 | 9 | 5 | 55.5556 | |
| jli-custom | INDEL | I16_PLUS | map_siren | * | 94.5527 | 90.6977 | 98.7500 | 90.1840 | 78 | 8 | 79 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.4868 | 99.3209 | 97.6667 | 72.1900 | 1170 | 8 | 1172 | 28 | 28 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 99.2158 | 99.0361 | 99.3961 | 84.2466 | 822 | 8 | 823 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 98.9652 | 98.3539 | 99.5842 | 84.9452 | 478 | 8 | 479 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.8052 | 90.1235 | 100.0000 | 75.4209 | 73 | 8 | 73 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.2789 | 94.7020 | 100.0000 | 44.1948 | 143 | 8 | 149 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.4472 | 91.7526 | 87.2549 | 95.2909 | 89 | 8 | 89 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | * | 92.7526 | 94.4056 | 91.1565 | 94.8923 | 135 | 8 | 134 | 13 | 2 | 15.3846 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6913 | 98.9362 | 92.6526 | 62.5292 | 744 | 8 | 744 | 59 | 59 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2664 | 99.8896 | 98.6509 | 37.0615 | 7239 | 8 | 7239 | 99 | 98 | 98.9899 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1511 | 98.6486 | 99.6587 | 83.2763 | 584 | 8 | 584 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 92.1905 | 40 | 8 | 41 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.1776 | 98.6907 | 99.6694 | 83.8924 | 603 | 8 | 603 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.1896 | 98.7097 | 99.6743 | 83.9687 | 612 | 8 | 612 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3525 | 99.2040 | 99.5015 | 66.2630 | 997 | 8 | 998 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.4291 | 95.0000 | 95.8621 | 89.7959 | 152 | 8 | 139 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.1956 | 99.3209 | 97.0954 | 73.3937 | 1170 | 8 | 1170 | 35 | 35 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.5869 | 97.3244 | 93.9103 | 93.8991 | 291 | 8 | 293 | 19 | 1 | 5.2632 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5756 | 97.4110 | 93.8080 | 94.4224 | 301 | 8 | 303 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.5377 | 97.4763 | 93.6747 | 94.4249 | 309 | 8 | 311 | 21 | 1 | 4.7619 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.3238 | 98.3607 | 98.2869 | 82.7101 | 480 | 8 | 459 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | SNP | * | func_cds | het | 99.1816 | 99.9283 | 98.4461 | 36.9727 | 11153 | 8 | 11150 | 176 | 1 | 0.5682 | |
| jmaeng-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7420 | 99.5423 | 99.9426 | 61.0950 | 1740 | 8 | 1740 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.7204 | 99.7965 | 99.6444 | 58.5971 | 3923 | 8 | 3923 | 14 | 1 | 7.1429 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.9184 | 92.1569 | 100.0000 | 92.8299 | 94 | 8 | 94 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.7064 | 96.3801 | 99.0698 | 91.1194 | 213 | 8 | 213 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1765 | 99.0599 | 99.2933 | 88.5872 | 843 | 8 | 843 | 6 | 4 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4555 | 99.2754 | 99.6364 | 86.7438 | 1096 | 8 | 1096 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8342 | 99.6690 | 100.0000 | 72.9599 | 2409 | 8 | 2409 | 0 | 0 | ||