PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32001-32050 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | * | 92.6956 | 91.2621 | 94.1748 | 88.1609 | 94 | 9 | 97 | 6 | 2 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 67.9537 | 55.0000 | 88.8889 | 89.6552 | 11 | 9 | 8 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.9362 | 86.3636 | 91.6667 | 83.5616 | 57 | 9 | 55 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.7677 | 66.6667 | 90.4762 | 88.3978 | 18 | 9 | 19 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.9011 | 98.3607 | 99.4475 | 79.0104 | 540 | 9 | 540 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0392 | 97.6562 | 98.4252 | 84.5998 | 375 | 9 | 375 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6364 | 89.6552 | 87.6404 | 92.1793 | 78 | 9 | 78 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.0110 | 90.0000 | 88.0435 | 93.0983 | 81 | 9 | 81 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | homalt | 99.8492 | 99.9151 | 99.7834 | 59.8813 | 10589 | 9 | 10594 | 23 | 21 | 91.3043 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.4485 | 99.8241 | 97.1103 | 48.4061 | 5108 | 9 | 5108 | 152 | 151 | 99.3421 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | het | 97.6774 | 97.3913 | 97.9651 | 86.4780 | 336 | 9 | 337 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0294 | 99.2360 | 96.8517 | 72.5744 | 1169 | 9 | 1169 | 38 | 38 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | * | 96.7902 | 97.0968 | 96.4856 | 86.1688 | 301 | 9 | 302 | 11 | 1 | 9.0909 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 88.8889 | 83.0189 | 95.6522 | 88.3838 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | * | 88.8889 | 83.0189 | 95.6522 | 89.6861 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | * | 88.8889 | 83.0189 | 95.6522 | 89.9563 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8406 | 99.7395 | 99.9420 | 62.2220 | 3446 | 9 | 3446 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 18 | 9 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | HG002compoundhet | homalt | 99.8228 | 99.7344 | 99.9113 | 42.6999 | 3379 | 9 | 3380 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.0523 | 82.0000 | 70.9091 | 81.7276 | 41 | 9 | 39 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | INDEL | * | segdup | hetalt | 96.4143 | 93.0769 | 100.0000 | 95.1464 | 121 | 9 | 121 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 87.5000 | 79.5455 | 97.2222 | 97.0322 | 35 | 9 | 35 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.2294 | 97.7556 | 96.7089 | 76.0751 | 392 | 9 | 382 | 13 | 11 | 84.6154 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.0575 | 80.4348 | 90.2439 | 53.9326 | 37 | 9 | 37 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 66.0000 | 17 | 9 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.7826 | 81.2500 | 88.6364 | 91.1824 | 39 | 9 | 39 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 67.3077 | 17 | 9 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.7143 | 82.3529 | 89.3617 | 90.8382 | 42 | 9 | 42 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.0233 | 86.9565 | 100.0000 | 58.0420 | 60 | 9 | 60 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6717 | 99.6061 | 99.7373 | 45.9408 | 2276 | 9 | 2278 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | segdup | * | 99.4999 | 99.1840 | 99.8179 | 94.3988 | 1094 | 9 | 1096 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9134 | 86.7647 | 100.0000 | 72.5581 | 59 | 9 | 59 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 92.9134 | 86.7647 | 100.0000 | 73.6607 | 59 | 9 | 59 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | segdup | * | 96.2963 | 95.2880 | 97.3262 | 92.9726 | 182 | 9 | 182 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.0041 | 92.6230 | 93.3884 | 80.4207 | 113 | 9 | 113 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 74.7423 | 99 | 9 | 98 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 75.6757 | 60.8696 | 100.0000 | 75.8621 | 14 | 9 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.0495 | 94.1176 | 96.0000 | 76.9231 | 144 | 9 | 144 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3740 | 94.1935 | 98.6577 | 81.7625 | 146 | 9 | 147 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.6415 | 95.8333 | 99.5192 | 63.1206 | 207 | 9 | 207 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | * | 81.3559 | 72.7273 | 92.3077 | 91.0653 | 24 | 9 | 24 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0000 | 83.0189 | 93.6170 | 89.3905 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | * | 88.0000 | 83.0189 | 93.6170 | 90.5242 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | * | 88.0000 | 83.0189 | 93.6170 | 90.8382 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7998 | 99.6004 | 100.0000 | 54.6227 | 2243 | 9 | 2243 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8378 | 99.7756 | 99.9001 | 47.7433 | 4002 | 9 | 4002 | 4 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1395 | 99.1848 | 99.0942 | 85.7787 | 1095 | 9 | 1094 | 10 | 8 | 80.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8457 | 99.8792 | 99.8121 | 39.2368 | 7443 | 9 | 7438 | 14 | 3 | 21.4286 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.1927 | 82.3529 | 88.2353 | 94.1379 | 42 | 9 | 30 | 4 | 0 | 0.0000 | |