PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31901-31950 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.6741 | 99.7905 | 99.5579 | 54.7054 | 4286 | 9 | 4279 | 19 | 1 | 5.2632 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.6154 | 78.5714 | 91.6667 | 96.0656 | 33 | 9 | 33 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7161 | 99.4907 | 99.9426 | 43.6105 | 1758 | 9 | 1742 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1683 | 75.0000 | 93.3333 | 87.0690 | 27 | 9 | 28 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 61.5385 | 47.0588 | 88.8889 | 95.9641 | 8 | 9 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 40.0000 | 35.7143 | 45.4545 | 98.1788 | 5 | 9 | 5 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 38.4615 | 35.7143 | 41.6667 | 98.0645 | 5 | 9 | 5 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | I16_PLUS | func_cds | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 10.0000 | 0.0000 | 0.0000 | 1 | 9 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | segdup | * | 86.7257 | 84.4828 | 89.0909 | 92.1090 | 49 | 9 | 49 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | homalt | 47.0588 | 30.7692 | 100.0000 | 97.2028 | 4 | 9 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.3906 | 75.6757 | 92.8571 | 77.4194 | 28 | 9 | 39 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.8571 | 87.8378 | 98.4848 | 78.0000 | 65 | 9 | 65 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 75.6757 | 60.8696 | 100.0000 | 20.0000 | 14 | 9 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | * | 76.9231 | 62.5000 | 100.0000 | 98.4600 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1793 | 97.2561 | 99.1202 | 37.6600 | 319 | 9 | 338 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2867 | 99.8758 | 98.7045 | 36.9692 | 7238 | 9 | 7238 | 95 | 94 | 98.9474 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.7615 | 97.6623 | 97.8610 | 79.2798 | 376 | 9 | 366 | 8 | 7 | 87.5000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7372 | 99.6061 | 99.8685 | 48.0892 | 2276 | 9 | 2279 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 90.3226 | 82.3529 | 100.0000 | 91.7939 | 42 | 9 | 43 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | segdup | * | 99.1399 | 99.1840 | 99.0958 | 96.1257 | 1094 | 9 | 1096 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.8838 | 90.5263 | 97.5000 | 91.3886 | 86 | 9 | 78 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.7431 | 84.7458 | 100.0000 | 72.2222 | 50 | 9 | 55 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.9883 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3607 | 94.8571 | 100.0000 | 65.1452 | 166 | 9 | 168 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8140 | 91.9643 | 100.0000 | 71.9346 | 103 | 9 | 103 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2766 | 99.2360 | 97.3356 | 73.4116 | 1169 | 9 | 1169 | 32 | 32 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | * | homalt | 97.7408 | 99.8557 | 95.7136 | 54.8957 | 6230 | 9 | 6230 | 279 | 277 | 99.2832 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6885 | 99.4406 | 99.9375 | 43.4875 | 1600 | 9 | 1600 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3727 | 99.4055 | 99.3399 | 88.6347 | 1505 | 9 | 1505 | 10 | 9 | 90.0000 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 87.5304 | 79.5455 | 97.2973 | 66.0550 | 35 | 9 | 36 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m1_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 83.7838 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.3659 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | tech_badpromoters | het | 88.6076 | 79.5455 | 100.0000 | 43.5484 | 35 | 9 | 35 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.3583 | 95.9459 | 96.7742 | 64.4262 | 213 | 9 | 210 | 7 | 4 | 57.1429 | |
| ckim-vqsr | SNP | tv | func_cds | homalt | 99.7352 | 99.4718 | 100.0000 | 25.8206 | 1695 | 9 | 1695 | 0 | 0 | ||