PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31651-31700 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | * | 30.1075 | 18.1818 | 87.5000 | 88.7324 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | segdup | hetalt | 90.5263 | 82.6923 | 100.0000 | 98.1308 | 43 | 9 | 14 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | het | 80.3709 | 68.9655 | 96.2963 | 85.1648 | 20 | 9 | 26 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | homalt | 80.6452 | 73.5294 | 89.2857 | 90.8497 | 25 | 9 | 25 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 90.5660 | 27 | 9 | 27 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 82.3529 | 75.6757 | 90.3226 | 90.4615 | 28 | 9 | 28 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | * | 62.0690 | 50.0000 | 81.8182 | 96.2199 | 9 | 9 | 9 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | * | 92.3810 | 91.5094 | 93.2692 | 96.3636 | 97 | 9 | 97 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | * | 91.6300 | 92.0354 | 91.2281 | 96.5990 | 104 | 9 | 104 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | * | 91.7031 | 92.1053 | 91.3043 | 96.6628 | 105 | 9 | 105 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | homalt | 97.4757 | 98.0973 | 96.8619 | 93.7995 | 464 | 9 | 463 | 15 | 7 | 46.6667 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 26.6667 | 47.0588 | 18.6047 | 97.2132 | 8 | 9 | 8 | 35 | 1 | 2.8571 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | het | 88.0637 | 97.3607 | 80.3874 | 95.1486 | 332 | 9 | 332 | 81 | 18 | 22.2222 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | homalt | 93.4579 | 91.7431 | 95.2381 | 94.3760 | 100 | 9 | 100 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 93.8053 | 92.1739 | 95.4955 | 94.7243 | 106 | 9 | 106 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e1 | homalt | 93.8596 | 92.2414 | 95.5357 | 94.7955 | 107 | 9 | 107 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | het | 89.8148 | 98.4772 | 82.5532 | 89.6186 | 582 | 9 | 582 | 123 | 22 | 17.8862 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | het | 90.8745 | 98.7603 | 84.1549 | 90.4911 | 717 | 9 | 717 | 135 | 26 | 19.2593 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | het | 91.1836 | 98.8220 | 84.6413 | 91.0008 | 755 | 9 | 755 | 137 | 26 | 18.9781 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e1 | het | 91.0832 | 98.8312 | 84.4617 | 91.0642 | 761 | 9 | 761 | 140 | 27 | 19.2857 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.0340 | 78.5714 | 75.5556 | 99.4804 | 33 | 9 | 34 | 11 | 6 | 54.5455 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 56.0510 | 55.0000 | 57.1429 | 99.8789 | 11 | 9 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 91.0448 | 3 | 9 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0358 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0463 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | homalt | 40.0000 | 25.0000 | 100.0000 | 50.0000 | 3 | 9 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | het | 18.1818 | 10.0000 | 100.0000 | 88.8889 | 1 | 9 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||