PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31551-31600 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | segdup | * | 96.8085 | 95.2880 | 98.3784 | 93.0582 | 182 | 9 | 182 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3607 | 94.8571 | 100.0000 | 64.1026 | 166 | 9 | 168 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 99.1816 | 98.9498 | 99.4145 | 85.5524 | 848 | 9 | 849 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 98.8859 | 98.1891 | 99.5927 | 86.2696 | 488 | 9 | 489 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 99.1939 | 98.9655 | 99.4233 | 85.7143 | 861 | 9 | 862 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 98.9102 | 98.2283 | 99.6016 | 86.3661 | 499 | 9 | 500 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | segdup | * | 99.3377 | 99.1501 | 99.5261 | 94.0200 | 1050 | 9 | 1050 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.8149 | 98.0851 | 99.5556 | 59.5687 | 461 | 9 | 448 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | * | 94.1888 | 91.5094 | 97.0297 | 93.4755 | 97 | 9 | 98 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | het | 91.0871 | 85.0000 | 98.1132 | 91.4239 | 51 | 9 | 52 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | * | 94.5577 | 92.0354 | 97.2222 | 94.2614 | 104 | 9 | 105 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | het | 91.9483 | 86.3636 | 98.3051 | 92.3575 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | * | 94.6067 | 92.1053 | 97.2477 | 94.4160 | 105 | 9 | 106 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | het | 91.9483 | 86.3636 | 98.3051 | 92.7160 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | * | 95.4374 | 92.1053 | 99.0196 | 80.1556 | 105 | 9 | 101 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.5192 | 92.2414 | 99.0385 | 81.8815 | 107 | 9 | 103 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.5234 | 92.2414 | 99.0476 | 82.1124 | 107 | 9 | 104 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.7867 | 78.5714 | 89.7436 | 95.4064 | 33 | 9 | 35 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.8442 | 86.3636 | 93.6170 | 94.7486 | 57 | 9 | 44 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6975 | 99.6368 | 99.7584 | 27.0564 | 2469 | 9 | 2477 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7439 | 99.5818 | 99.9065 | 40.0728 | 2143 | 9 | 2138 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m1_e0 | homalt | 98.8000 | 98.0519 | 99.5595 | 83.2163 | 453 | 9 | 452 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7133 | 99.4851 | 99.9425 | 62.4676 | 1739 | 9 | 1739 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6651 | 99.7679 | 99.5625 | 58.6903 | 3869 | 9 | 3869 | 17 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4796 | 99.6391 | 99.3205 | 59.4883 | 2485 | 9 | 2485 | 17 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.6684 | 97.6684 | 97.6684 | 90.9048 | 377 | 9 | 377 | 9 | 4 | 44.4444 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6996 | 93.7063 | 95.7143 | 92.5013 | 134 | 9 | 134 | 6 | 3 | 50.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.0950 | 99.1848 | 99.0054 | 86.2506 | 1095 | 9 | 1095 | 11 | 4 | 36.3636 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8769 | 99.7786 | 99.9754 | 44.9525 | 4056 | 9 | 4056 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9059 | 99.0142 | 98.7978 | 89.1921 | 904 | 9 | 904 | 11 | 6 | 54.5455 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | homalt | 99.3044 | 99.0395 | 99.5708 | 85.4375 | 928 | 9 | 928 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | tv | map_l250_m2_e1 | homalt | 99.3111 | 99.0486 | 99.5749 | 85.5298 | 937 | 9 | 937 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | het | 92.7708 | 97.3607 | 88.5942 | 95.5715 | 332 | 9 | 334 | 43 | 1 | 2.3256 | |
| jmaeng-gatk | INDEL | * | map_l150_m1_e0 | homalt | 98.5854 | 98.0519 | 99.1247 | 88.7105 | 453 | 9 | 453 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | homalt | 98.6416 | 98.1289 | 99.1597 | 89.6206 | 472 | 9 | 472 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.5714 | 98.1707 | 98.9754 | 89.5771 | 483 | 9 | 483 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | SNP | tv | func_cds | * | 99.2038 | 99.7941 | 98.6205 | 39.0741 | 4362 | 9 | 4361 | 61 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.1788 | 98.8665 | 99.4930 | 89.4926 | 785 | 9 | 785 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.4444 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 62.8571 | 55.0000 | 73.3333 | 99.5745 | 11 | 9 | 11 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l250_m1_e0 | homalt | 93.8967 | 91.7431 | 96.1538 | 94.0673 | 100 | 9 | 100 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 94.2222 | 92.1739 | 96.3636 | 94.4276 | 106 | 9 | 106 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e1 | homalt | 94.2731 | 92.2414 | 96.3964 | 94.4995 | 107 | 9 | 107 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | het | 70.4762 | 80.4348 | 62.7119 | 95.1199 | 37 | 9 | 37 | 22 | 19 | 86.3636 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0164 | 98.0519 | 100.0000 | 48.4429 | 453 | 9 | 447 | 0 | 0 | ||