PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31251-31300 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 86.1789 | 15 | 10 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 73.6842 | 58.3333 | 100.0000 | 85.2941 | 14 | 10 | 15 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 71.6418 | 60.0000 | 88.8889 | 67.8571 | 15 | 10 | 16 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.0635 | 85.2941 | 100.0000 | 55.3846 | 58 | 10 | 58 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.2727 | 62.9630 | 100.0000 | 93.6170 | 17 | 10 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.6645 | 97.8723 | 97.4576 | 62.7466 | 460 | 10 | 460 | 12 | 3 | 25.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4488 | 97.9424 | 98.9605 | 85.8903 | 476 | 10 | 476 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | het | 98.4833 | 97.9879 | 98.9837 | 87.1170 | 487 | 10 | 487 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | het | 98.5163 | 98.0315 | 99.0060 | 87.2108 | 498 | 10 | 498 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | het | 95.0101 | 93.0070 | 97.1014 | 84.4419 | 133 | 10 | 134 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7765 | 90.9091 | 92.6606 | 88.7745 | 100 | 10 | 101 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.0540 | 17 | 10 | 17 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.1111 | 75.6098 | 100.0000 | 91.5254 | 31 | 10 | 30 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | homalt | 98.9608 | 98.4102 | 99.5177 | 90.5327 | 619 | 10 | 619 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3407 | 98.9059 | 99.7792 | 68.3217 | 904 | 10 | 904 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.2958 | 98.8318 | 99.7642 | 85.6708 | 846 | 10 | 846 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | homalt | 99.3569 | 98.9328 | 99.7847 | 86.9321 | 927 | 10 | 927 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | homalt | 99.3631 | 98.9429 | 99.7868 | 87.0245 | 936 | 10 | 936 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l125_m2_e1 | hetalt | 86.8421 | 76.7442 | 100.0000 | 93.2806 | 33 | 10 | 17 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | homalt | 84.3750 | 84.3750 | 84.3750 | 86.7220 | 54 | 10 | 54 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | homalt | 84.6154 | 84.6154 | 84.6154 | 87.3047 | 55 | 10 | 55 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | homalt | 85.0746 | 85.0746 | 85.0746 | 87.3106 | 57 | 10 | 57 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | het | 40.8163 | 28.5714 | 71.4286 | 92.9293 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | het | 40.8163 | 28.5714 | 71.4286 | 93.0693 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | het | 81.2500 | 79.5918 | 82.9787 | 86.6856 | 39 | 10 | 39 | 8 | 5 | 62.5000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 32.8502 | 62.9630 | 22.2222 | 78.5714 | 17 | 10 | 2 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.4958 | 98.9669 | 98.0290 | 61.4708 | 958 | 10 | 945 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 75.0000 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 78.5714 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 70.5882 | 54.5455 | 100.0000 | 79.3103 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | * | tech_badpromoters | het | 92.4138 | 87.0130 | 98.5294 | 38.1818 | 67 | 10 | 67 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1797 | 98.9154 | 97.4549 | 72.8477 | 912 | 10 | 919 | 24 | 3 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7101 | 99.4220 | 100.0000 | 30.6569 | 1720 | 10 | 1710 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 70.9091 | 60.0000 | 86.6667 | 81.7073 | 15 | 10 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | het | 86.6667 | 79.5918 | 95.1220 | 66.6667 | 39 | 10 | 39 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.8784 | 97.1098 | 94.6779 | 65.0000 | 336 | 10 | 338 | 19 | 4 | 21.0526 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2751 | 94.3820 | 98.2456 | 64.3006 | 168 | 10 | 168 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 76.5957 | 66.6667 | 90.0000 | 71.0145 | 20 | 10 | 18 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.2758 | 92.1260 | 90.4412 | 74.2424 | 117 | 10 | 123 | 13 | 5 | 38.4615 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | * | 91.9424 | 91.4530 | 92.4370 | 89.1225 | 107 | 10 | 110 | 9 | 5 | 55.5556 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 87.2038 | 90.1961 | 84.4037 | 69.2958 | 92 | 10 | 92 | 17 | 14 | 82.3529 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.1168 | 99.0593 | 99.1743 | 78.7979 | 1053 | 10 | 1081 | 9 | 4 | 44.4444 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 79.5918 | 0.0000 | 0.0000 | 39 | 10 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 88.3721 | 79.1667 | 100.0000 | 96.0784 | 38 | 10 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 89.1304 | 80.3922 | 100.0000 | 96.0784 | 41 | 10 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 80.3712 | 78.7234 | 82.0896 | 94.0603 | 37 | 10 | 55 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 65.6250 | 58.3333 | 75.0000 | 80.1418 | 14 | 10 | 21 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 68.7222 | 62.9630 | 75.6410 | 66.6667 | 17 | 10 | 59 | 19 | 12 | 63.1579 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 78.2609 | 64.2857 | 100.0000 | 80.4878 | 18 | 10 | 8 | 0 | 0 | ||