PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30951-31000 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 83.6066 | 0.0000 | 0.0000 | 51 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 93.3775 | 0.0000 | 0.0000 | 141 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6843 | 99.4279 | 99.9421 | 53.0723 | 1738 | 10 | 1725 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | segdup | homalt | 99.8600 | 99.8668 | 99.8533 | 87.0523 | 7495 | 10 | 7487 | 11 | 11 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6313 | 99.3324 | 99.9319 | 72.9366 | 1488 | 10 | 1468 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.1169 | 76.1905 | 91.4286 | 87.5887 | 32 | 10 | 32 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 52.6316 | 50.0000 | 55.5556 | 99.5007 | 10 | 10 | 10 | 8 | 4 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.4211 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 93.5065 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 59.2593 | 44.4444 | 88.8889 | 96.0352 | 8 | 10 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | homalt | 60.7595 | 70.5882 | 53.3333 | 89.9103 | 24 | 10 | 24 | 21 | 16 | 76.1905 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | het | 79.5789 | 72.9730 | 87.5000 | 90.3614 | 27 | 10 | 28 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 37.0370 | 33.3333 | 41.6667 | 99.0603 | 5 | 10 | 5 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | * | 52.1739 | 54.5455 | 50.0000 | 52.0000 | 12 | 10 | 12 | 12 | 9 | 75.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 92.0000 | 0.0000 | 0.0000 | 115 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m0_e0 | homalt | 97.5089 | 96.4789 | 98.5612 | 87.0215 | 274 | 10 | 274 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.2224 | 98.6702 | 93.8931 | 48.2213 | 742 | 10 | 738 | 48 | 41 | 85.4167 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.4409 | 97.7011 | 99.1919 | 60.2410 | 425 | 10 | 491 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.8280 | 96.1240 | 99.5935 | 81.4199 | 248 | 10 | 245 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2009 | 99.0050 | 99.3976 | 60.0802 | 995 | 10 | 990 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.8007 | 99.6434 | 96.0249 | 44.6210 | 2794 | 10 | 2778 | 115 | 115 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.3241 | 82.4561 | 84.2105 | 99.3544 | 47 | 10 | 48 | 9 | 1 | 11.1111 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 88.3721 | 0.0000 | 0.0000 | 76 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 83.0508 | 0.0000 | 0.0000 | 49 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1807 | 95.9350 | 98.4592 | 79.2386 | 236 | 10 | 639 | 10 | 6 | 60.0000 | |
| ciseli-custom | SNP | * | func_cds | homalt | 99.2844 | 99.8567 | 98.7187 | 22.2148 | 6969 | 10 | 6934 | 90 | 38 | 42.2222 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | homalt | 97.6490 | 98.0354 | 97.2656 | 84.3281 | 499 | 10 | 498 | 14 | 6 | 42.8571 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 92.6076 | 88.2353 | 97.4359 | 91.4191 | 75 | 10 | 76 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_siren | homalt | 95.2381 | 92.3077 | 98.3607 | 84.5178 | 120 | 10 | 120 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.8272 | 88.3721 | 100.0000 | 76.0000 | 76 | 10 | 102 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.8316 | 94.3820 | 99.4118 | 82.3468 | 168 | 10 | 169 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.7407 | 83.0508 | 100.0000 | 71.4912 | 49 | 10 | 65 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.6553 | 94.0476 | 99.4118 | 79.9292 | 158 | 10 | 169 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | * | 91.5949 | 88.3721 | 95.0617 | 93.1761 | 76 | 10 | 77 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3694 | 98.9529 | 99.7895 | 80.5964 | 945 | 10 | 948 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 94.1755 | 98.4686 | 90.2411 | 69.2008 | 643 | 10 | 786 | 85 | 83 | 97.6471 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.5309 | 93.0070 | 74.1758 | 91.4794 | 133 | 10 | 135 | 47 | 3 | 6.3830 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6772 | 97.3890 | 100.0000 | 83.6726 | 373 | 10 | 377 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4857 | 99.3958 | 99.5758 | 60.5358 | 1645 | 10 | 1643 | 7 | 4 | 57.1429 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.3107 | 96.1240 | 96.4981 | 87.2076 | 248 | 10 | 248 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | I16_PLUS | HG002complexvar | het | 99.2424 | 98.4962 | 100.0000 | 64.5705 | 655 | 10 | 631 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.6709 | 88.0952 | 100.0000 | 59.3407 | 74 | 10 | 74 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | segdup | * | 99.1033 | 99.0557 | 99.1509 | 94.5434 | 1049 | 10 | 1051 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.8462 | 95.9514 | 97.7578 | 81.0374 | 237 | 10 | 218 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m0_e0 | homalt | 66.4001 | 91.2281 | 52.1951 | 85.4403 | 104 | 10 | 107 | 98 | 91 | 92.8571 | |
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 41.1765 | 0.0000 | 0.0000 | 7 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | * | 54.6638 | 58.3333 | 51.4286 | 98.2952 | 14 | 10 | 18 | 17 | 10 | 58.8235 | |
| anovak-vg | INDEL | I1_5 | tech_badpromoters | * | 63.6735 | 54.5455 | 76.4706 | 51.4286 | 12 | 10 | 13 | 4 | 3 | 75.0000 | |