PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30501-30550 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | * | tech_badpromoters | het | 91.6667 | 85.7143 | 98.5075 | 37.9630 | 66 | 11 | 66 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 57.6923 | 78.9474 | 94.6176 | 15 | 11 | 15 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.2817 | 91.6667 | 99.1935 | 77.0370 | 121 | 11 | 123 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.8173 | 99.8685 | 97.7879 | 55.5694 | 8355 | 11 | 8355 | 189 | 186 | 98.4127 | |
| ckim-vqsr | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.4622 | 119 | 11 | 121 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0588 | 98.9652 | 99.1525 | 77.2688 | 1052 | 11 | 1053 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.7529 | 97.3236 | 98.1859 | 78.3718 | 400 | 11 | 433 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m1_e0 | * | 96.6767 | 93.5673 | 100.0000 | 90.7736 | 160 | 11 | 161 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | * | 96.9188 | 94.0217 | 100.0000 | 91.5122 | 173 | 11 | 174 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | * | 96.9359 | 94.0541 | 100.0000 | 91.6547 | 174 | 11 | 175 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7655 | 97.6293 | 97.9021 | 61.5936 | 453 | 11 | 420 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.0851 | 59.2593 | 80.0000 | 96.0239 | 16 | 11 | 16 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002compoundhet | homalt | 69.9841 | 96.2199 | 54.9902 | 71.9231 | 280 | 11 | 281 | 230 | 208 | 90.4348 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0752 | 97.9853 | 98.1651 | 74.8500 | 535 | 11 | 535 | 10 | 7 | 70.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0930 | 96.8116 | 97.3761 | 87.2063 | 334 | 11 | 334 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.8720 | 92.5676 | 42.0945 | 50.6085 | 137 | 11 | 205 | 282 | 275 | 97.5177 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.5000 | 73.8095 | 81.5789 | 99.3308 | 31 | 11 | 31 | 7 | 3 | 42.8571 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | * | 92.0843 | 91.2698 | 92.9134 | 89.3990 | 115 | 11 | 118 | 9 | 5 | 55.5556 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | * | 50.6787 | 38.8889 | 72.7273 | 93.4524 | 7 | 11 | 8 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 81.3559 | 68.5714 | 100.0000 | 76.1905 | 24 | 11 | 25 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.2551 | 87.6404 | 95.1807 | 72.6974 | 78 | 11 | 79 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.3886 | 90.9836 | 85.9375 | 59.6215 | 111 | 11 | 110 | 18 | 18 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | het | 73.2883 | 63.3333 | 86.9565 | 81.4516 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | het | 73.2883 | 63.3333 | 86.9565 | 84.6667 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | het | 73.2883 | 63.3333 | 86.9565 | 84.9673 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | SNP | * | tech_badpromoters | * | 93.8907 | 92.9936 | 94.8052 | 42.1053 | 146 | 11 | 146 | 8 | 6 | 75.0000 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 66.6667 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m2_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 73.3333 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 75.0000 | 4 | 11 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.2676 | 68.5714 | 96.7742 | 85.1675 | 24 | 11 | 30 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6377 | 99.1766 | 96.1458 | 58.9707 | 1325 | 11 | 1372 | 55 | 1 | 1.8182 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | * | 45.7741 | 60.7143 | 36.7347 | 93.3243 | 17 | 11 | 18 | 31 | 4 | 12.9032 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 61.0762 | 63.3333 | 58.9744 | 88.3582 | 19 | 11 | 46 | 32 | 3 | 9.3750 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 61.6216 | 63.3333 | 60.0000 | 88.9503 | 19 | 11 | 48 | 32 | 3 | 9.3750 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 61.2286 | 63.3333 | 59.2593 | 88.9646 | 19 | 11 | 48 | 33 | 3 | 9.0909 | |
| qzeng-custom | INDEL | I6_15 | map_siren | homalt | 77.8370 | 87.7778 | 69.9187 | 73.1441 | 79 | 11 | 86 | 37 | 1 | 2.7027 | |
| qzeng-custom | INDEL | I6_15 | segdup | hetalt | 86.0759 | 75.5556 | 100.0000 | 90.9091 | 34 | 11 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.3734 | 98.8433 | 97.9079 | 86.6050 | 940 | 11 | 936 | 20 | 15 | 75.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 85.2476 | 92.3077 | 79.1908 | 94.6916 | 132 | 11 | 137 | 36 | 9 | 25.0000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3033 | 99.1013 | 99.5062 | 65.8995 | 1213 | 11 | 1209 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8699 | 99.5676 | 98.1818 | 59.8602 | 2533 | 11 | 2538 | 47 | 2 | 4.2553 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.9858 | 99.8938 | 98.0942 | 44.9243 | 10346 | 11 | 10346 | 201 | 197 | 98.0100 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | het | 96.0833 | 96.7742 | 95.4023 | 90.5691 | 330 | 11 | 332 | 16 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | het | 93.2292 | 94.2105 | 92.2680 | 95.0218 | 179 | 11 | 179 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | het | 93.8679 | 94.7619 | 92.9907 | 95.2339 | 199 | 11 | 199 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | het | 93.8967 | 94.7867 | 93.0233 | 95.3524 | 200 | 11 | 200 | 15 | 1 | 6.6667 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.3339 | 98.0903 | 96.5891 | 65.8188 | 565 | 11 | 623 | 22 | 7 | 31.8182 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.0000 | 100.0000 | 44 | 11 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.6849 | 56.0000 | 63.8889 | 83.7838 | 14 | 11 | 23 | 13 | 5 | 38.4615 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.9540 | 81.9672 | 56.5891 | 68.9157 | 50 | 11 | 146 | 112 | 91 | 81.2500 | |