PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30351-30400 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | hetalt | 64.5161 | 47.6190 | 100.0000 | 98.4615 | 10 | 11 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | hetalt | 64.5161 | 47.6190 | 100.0000 | 98.6431 | 10 | 11 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 71.7949 | 56.0000 | 100.0000 | 51.7241 | 14 | 11 | 14 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | het | 59.2593 | 42.1053 | 100.0000 | 98.1043 | 8 | 11 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | * | 74.4186 | 59.2593 | 100.0000 | 97.0909 | 16 | 11 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | * | 74.4186 | 59.2593 | 100.0000 | 97.3597 | 16 | 11 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | func_cds | * | 96.4169 | 93.0818 | 100.0000 | 49.3151 | 148 | 11 | 148 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.5455 | 97.6190 | 84.4278 | 68.9032 | 451 | 11 | 450 | 83 | 83 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 82.7273 | 89.2157 | 77.1186 | 54.2636 | 91 | 11 | 91 | 27 | 27 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 71.7949 | 56.0000 | 100.0000 | 0.0000 | 14 | 11 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.3404 | 60.7143 | 89.4737 | 90.1042 | 17 | 11 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.5864 | 85.3333 | 94.2857 | 58.3333 | 64 | 11 | 66 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | * | 97.5855 | 97.7823 | 97.3896 | 88.3263 | 485 | 11 | 485 | 13 | 1 | 7.6923 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 74.6479 | 44 | 11 | 18 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | * | 94.4016 | 91.4062 | 97.6000 | 88.7691 | 117 | 11 | 122 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | * | 42.1053 | 26.6667 | 100.0000 | 87.0968 | 4 | 11 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e0 | * | 42.1053 | 26.6667 | 100.0000 | 88.2353 | 4 | 11 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e1 | * | 42.1053 | 26.6667 | 100.0000 | 88.5714 | 4 | 11 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7462 | 97.6596 | 95.8498 | 63.4393 | 459 | 11 | 485 | 21 | 18 | 85.7143 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 79.3651 | 69.4444 | 92.5926 | 68.9655 | 25 | 11 | 25 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.3774 | 59.2593 | 61.5385 | 97.8369 | 16 | 11 | 16 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.9805 | 99.1013 | 98.8599 | 68.0375 | 1213 | 11 | 1214 | 14 | 8 | 57.1429 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1968 | 99.5561 | 98.8400 | 40.7302 | 2467 | 11 | 2471 | 29 | 6 | 20.6897 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | * | 69.3878 | 60.7143 | 80.9524 | 90.2326 | 17 | 11 | 17 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.4696 | 97.9853 | 95.0000 | 72.7838 | 535 | 11 | 665 | 35 | 35 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 69.3912 | 74.4186 | 65.0000 | 63.6364 | 32 | 11 | 39 | 21 | 20 | 95.2381 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | homalt | 75.3723 | 82.8125 | 69.1589 | 84.6705 | 53 | 11 | 74 | 33 | 30 | 90.9091 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | homalt | 74.5239 | 83.0769 | 67.5676 | 84.9389 | 54 | 11 | 75 | 36 | 33 | 91.6667 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | homalt | 74.3512 | 83.5821 | 66.9565 | 84.9279 | 56 | 11 | 77 | 38 | 35 | 92.1053 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 62.0690 | 45.0000 | 100.0000 | 87.0968 | 9 | 11 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | * | 88.0187 | 87.0588 | 89.0000 | 89.9598 | 74 | 11 | 89 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | het | 90.4649 | 88.0435 | 93.0233 | 92.0149 | 81 | 11 | 80 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | * | 41.1429 | 26.6667 | 90.0000 | 72.2222 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | * | 41.1429 | 26.6667 | 90.0000 | 76.1905 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | * | 41.1429 | 26.6667 | 90.0000 | 76.7442 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.3424 | 97.9964 | 94.7434 | 73.1789 | 538 | 11 | 757 | 42 | 37 | 88.0952 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0183 | 96.4401 | 97.6035 | 87.5509 | 298 | 11 | 448 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | het | 97.0790 | 96.5300 | 97.6344 | 87.6527 | 306 | 11 | 454 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | het | 72.5049 | 63.3333 | 84.7826 | 81.8182 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | het | 72.5049 | 63.3333 | 84.7826 | 83.2117 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | het | 86.9907 | 98.1261 | 78.1250 | 92.7637 | 576 | 11 | 575 | 161 | 28 | 17.3913 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | segdup | * | 79.8443 | 81.0345 | 78.6885 | 95.9816 | 47 | 11 | 48 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.6237 | 95.7364 | 99.5868 | 77.6133 | 247 | 11 | 241 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.5265 | 95.5645 | 99.5708 | 84.1389 | 237 | 11 | 232 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 70.2703 | 54.1667 | 100.0000 | 92.8962 | 13 | 11 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.0000 | 52.1739 | 70.5882 | 90.1163 | 12 | 11 | 12 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 80.6452 | 69.4444 | 96.1538 | 77.9661 | 25 | 11 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 68.4211 | 54.1667 | 92.8571 | 90.2098 | 13 | 11 | 13 | 1 | 1 | 100.0000 | |