PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29851-29900 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | homalt | 99.7867 | 99.7952 | 99.7782 | 67.3918 | 5848 | 12 | 5848 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | homalt | 99.7923 | 99.8006 | 99.7840 | 69.7785 | 6005 | 12 | 6005 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | homalt | 99.7942 | 99.8024 | 99.7860 | 69.8227 | 6062 | 12 | 6062 | 13 | 5 | 38.4615 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3457 | 98.6999 | 100.0000 | 30.6231 | 911 | 12 | 913 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | homalt | 99.4597 | 99.4597 | 99.4597 | 72.3171 | 2209 | 12 | 2209 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2378 | 98.6999 | 99.7817 | 29.1570 | 911 | 12 | 914 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l150_m0_e0 | * | 91.3832 | 97.6654 | 85.8603 | 94.2048 | 502 | 12 | 504 | 83 | 3 | 3.6145 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.1621 | 97.7230 | 87.2000 | 81.7983 | 515 | 12 | 436 | 64 | 51 | 79.6875 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.7060 | 96.3415 | 99.1098 | 37.3606 | 316 | 12 | 334 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.3333 | 86.2069 | 80.6452 | 94.7428 | 75 | 12 | 75 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 95.3033 | 78 | 12 | 78 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | * | 89.0690 | 91.6084 | 86.6667 | 94.5750 | 131 | 12 | 130 | 20 | 3 | 15.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 93.4933 | 99.0074 | 88.5609 | 87.9481 | 1197 | 12 | 1200 | 155 | 10 | 6.4516 | |
| jlack-gatk | INDEL | D1_5 | map_siren | het | 95.7195 | 99.4730 | 92.2389 | 84.5589 | 2265 | 12 | 2270 | 191 | 11 | 5.7592 | |
| jlack-gatk | INDEL | D1_5 | map_siren | homalt | 99.3983 | 98.9726 | 99.8277 | 79.2900 | 1156 | 12 | 1159 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | segdup | * | 95.5828 | 98.9121 | 92.4704 | 95.7903 | 1091 | 12 | 1093 | 89 | 5 | 5.6180 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 88.6792 | 79.6610 | 100.0000 | 71.7391 | 47 | 12 | 52 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8785 | 95.3488 | 92.4528 | 68.3014 | 246 | 12 | 245 | 20 | 12 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.4625 | 98.0645 | 98.8636 | 87.2332 | 608 | 12 | 609 | 7 | 5 | 71.4286 | |
| gduggal-snapfb | INDEL | I16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 91.6435 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 92.3274 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 75.3210 | 73.3333 | 77.4194 | 92.1717 | 33 | 12 | 24 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 37.3333 | 53.8462 | 28.5714 | 97.4833 | 14 | 12 | 14 | 35 | 1 | 2.8571 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 94.7040 | 92.6829 | 96.8153 | 91.0541 | 152 | 12 | 152 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 70.6236 | 94.0299 | 56.5476 | 85.1656 | 189 | 12 | 190 | 146 | 135 | 92.4658 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | segdup | * | 80.9978 | 79.3103 | 82.7586 | 95.3226 | 46 | 12 | 48 | 10 | 8 | 80.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m1_e0 | het | 91.4439 | 99.0074 | 84.9539 | 88.4423 | 1197 | 12 | 1197 | 212 | 63 | 29.7170 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 88.6400 | 95.8478 | 82.4405 | 93.2094 | 277 | 12 | 277 | 59 | 6 | 10.1695 | |
| gduggal-snapplat | SNP | * | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | * | tech_badpromoters | het | 61.5513 | 69.2308 | 55.4054 | 61.8557 | 27 | 12 | 41 | 33 | 24 | 72.7273 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 31.5789 | 20.0000 | 75.0000 | 94.3662 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | segdup | homalt | 0.0000 | 100.0000 | 0 | 12 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.8942 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.9114 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |