PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29701-29750 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e1 | homalt | 33.3333 | 20.0000 | 100.0000 | 95.0000 | 3 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m1_e0 | het | 33.3333 | 20.0000 | 100.0000 | 98.5294 | 3 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 98.7069 | 3 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | het | 40.0000 | 25.0000 | 100.0000 | 98.7395 | 4 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m1_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.3016 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m1_e0 | hetalt | 73.9130 | 58.6207 | 100.0000 | 74.2424 | 17 | 12 | 17 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 75.3425 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m2_e1 | hetalt | 76.0000 | 61.2903 | 100.0000 | 74.3243 | 19 | 12 | 19 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 74.4681 | 12 | 12 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 78.1818 | 12 | 12 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 78.1818 | 12 | 12 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m1_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.3016 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.5626 | 98.9848 | 88.7036 | 60.4379 | 1170 | 12 | 1170 | 149 | 147 | 98.6577 | |
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | het | 93.8659 | 96.4809 | 91.3889 | 95.6752 | 329 | 12 | 329 | 31 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | het | 90.3553 | 93.6842 | 87.2549 | 97.7493 | 178 | 12 | 178 | 26 | 1 | 3.8462 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 90.9744 | 92.2581 | 89.7260 | 80.4813 | 143 | 12 | 131 | 15 | 3 | 20.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | * | 48.0000 | 33.3333 | 85.7143 | 97.3485 | 6 | 12 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | het | 89.7285 | 86.9565 | 92.6829 | 92.5319 | 80 | 12 | 76 | 6 | 6 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.4855 | 86.9565 | 98.7654 | 53.7143 | 80 | 12 | 80 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m0_e0 | * | 96.4143 | 97.5806 | 95.2756 | 92.2773 | 484 | 12 | 484 | 24 | 3 | 12.5000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5654 | 99.3064 | 99.8258 | 36.8073 | 1718 | 12 | 1719 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | * | 96.0000 | 95.4545 | 96.5517 | 89.8325 | 252 | 12 | 252 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4113 | 99.1196 | 99.7048 | 77.3525 | 1351 | 12 | 1351 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | segdup | * | 99.0079 | 98.8669 | 99.1493 | 95.7156 | 1047 | 12 | 1049 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | * | 97.5042 | 96.0656 | 98.9865 | 86.0902 | 293 | 12 | 293 | 3 | 1 | 33.3333 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2446 | 91.6084 | 97.0370 | 92.7807 | 131 | 12 | 131 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7614 | 99.6188 | 99.9044 | 71.9607 | 3136 | 12 | 3136 | 3 | 3 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_l100_m0_e0 | hetalt | 25.0000 | 14.2857 | 100.0000 | 97.2973 | 2 | 12 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.1559 | 97.0803 | 99.2556 | 71.3778 | 399 | 12 | 400 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.3612 | 91.8919 | 59.6774 | 74.1667 | 136 | 12 | 111 | 75 | 74 | 98.6667 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1609 | 95.6364 | 96.6912 | 87.6307 | 263 | 12 | 263 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.8025 | 94.1748 | 97.4874 | 88.3010 | 194 | 12 | 194 | 5 | 2 | 40.0000 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | het | 94.9597 | 98.5882 | 91.5888 | 86.4942 | 838 | 12 | 784 | 72 | 70 | 97.2222 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.6605 | 91.8919 | 58.7302 | 73.5664 | 136 | 12 | 111 | 78 | 77 | 98.7179 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.3077 | 85.7143 | 100.0000 | 59.7765 | 72 | 12 | 72 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.8013 | 95.8333 | 95.7692 | 80.3625 | 276 | 12 | 249 | 11 | 8 | 72.7273 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3716 | 99.1196 | 99.6249 | 77.6829 | 1351 | 12 | 1328 | 5 | 3 | 60.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3958 | 98.0100 | 98.7847 | 72.5975 | 591 | 12 | 569 | 7 | 3 | 42.8571 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3989 | 93.5484 | 99.4286 | 70.8333 | 174 | 12 | 174 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7826 | 99.6527 | 99.9129 | 62.6693 | 3443 | 12 | 3443 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9052 | 99.8917 | 99.9188 | 56.2157 | 11072 | 12 | 11068 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | SNP | tv | map_l250_m0_e0 | het | 96.6350 | 97.9021 | 95.4003 | 93.3341 | 560 | 12 | 560 | 27 | 2 | 7.4074 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.8807 | 95.6522 | 98.1413 | 91.1948 | 264 | 12 | 264 | 5 | 3 | 60.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5976 | 97.4414 | 99.7817 | 85.6785 | 457 | 12 | 457 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 94.5063 | 90.9091 | 98.4000 | 87.8758 | 120 | 12 | 123 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 87.8383 | 97.0370 | 80.2326 | 59.6717 | 393 | 12 | 276 | 68 | 64 | 94.1176 | |