PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29551-29600 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.6517 | 71.4286 | 87.5000 | 98.7886 | 30 | 12 | 35 | 5 | 2 | 40.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 38.8889 | 25.0000 | 87.5000 | 66.6667 | 4 | 12 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 90.0901 | 89.2857 | 90.9091 | 84.7575 | 100 | 12 | 60 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | homalt | 98.9302 | 99.0099 | 98.8506 | 78.8211 | 1200 | 12 | 1204 | 14 | 8 | 57.1429 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 82.4742 | 76.9231 | 88.8889 | 57.1429 | 40 | 12 | 24 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.0010 | 80.6452 | 94.4444 | 79.8319 | 50 | 12 | 68 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.2892 | 71.4286 | 73.1707 | 97.3325 | 30 | 12 | 30 | 11 | 2 | 18.1818 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 69.9603 | 92.1053 | 56.4000 | 92.3571 | 140 | 12 | 141 | 109 | 7 | 6.4220 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.9127 | 81.8182 | 59.5238 | 95.2246 | 54 | 12 | 50 | 34 | 3 | 8.8235 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.9908 | 99.7206 | 92.5300 | 66.9362 | 4283 | 12 | 4162 | 336 | 9 | 2.6786 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4785 | 99.4671 | 99.4898 | 52.4587 | 2240 | 12 | 2145 | 11 | 2 | 18.1818 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7839 | 99.8029 | 99.7650 | 51.9403 | 6076 | 12 | 5943 | 14 | 7 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | homalt | 99.7393 | 99.7065 | 99.7720 | 78.7376 | 4077 | 12 | 3939 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4666 | 99.0196 | 94.0419 | 60.5213 | 1212 | 12 | 1168 | 74 | 18 | 24.3243 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 69.9877 | 92.1053 | 56.4356 | 92.2038 | 140 | 12 | 114 | 88 | 4 | 4.5455 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4574 | 99.5649 | 99.3502 | 34.3868 | 2746 | 12 | 2599 | 17 | 7 | 41.1765 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 68.1729 | 96.6574 | 52.6555 | 45.4921 | 347 | 12 | 347 | 312 | 311 | 99.6795 | |
| gduggal-bwafb | INDEL | * | segdup | homalt | 98.7493 | 98.7500 | 98.7487 | 93.7209 | 948 | 12 | 947 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.6923 | 100.0000 | 1 | 12 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.6923 | 55.5556 | 60.0000 | 97.8032 | 15 | 12 | 15 | 10 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 67.8492 | 81.8182 | 57.9545 | 95.9781 | 54 | 12 | 51 | 37 | 7 | 18.9189 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7368 | 97.5052 | 100.0000 | 47.4691 | 469 | 12 | 467 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | hetalt | 76.4505 | 70.0000 | 84.2105 | 94.8925 | 28 | 12 | 16 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 76.2943 | 63.6364 | 95.2381 | 76.1364 | 21 | 12 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 79.3651 | 67.5676 | 96.1538 | 69.7674 | 25 | 12 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | homalt | 78.5714 | 64.7059 | 100.0000 | 89.9543 | 22 | 12 | 22 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 89.8734 | 24 | 12 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | homalt | 80.6452 | 67.5676 | 100.0000 | 89.7119 | 25 | 12 | 25 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m1_e0 | * | 33.3333 | 20.0000 | 100.0000 | 97.3214 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e0 | * | 33.3333 | 20.0000 | 100.0000 | 97.5610 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | * | 33.3333 | 20.0000 | 100.0000 | 97.5806 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | hetalt | 40.0000 | 25.0000 | 100.0000 | 91.6667 | 4 | 12 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | homalt | 56.2500 | 42.8571 | 81.8182 | 84.2857 | 9 | 12 | 9 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.1818 | 55.5556 | 88.2353 | 84.5455 | 15 | 12 | 15 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.9821 | 36 | 12 | 36 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | * | 68.4211 | 52.0000 | 100.0000 | 97.5881 | 13 | 12 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | * | 68.4211 | 52.0000 | 100.0000 | 97.9066 | 13 | 12 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | * | 71.4286 | 55.5556 | 100.0000 | 97.6744 | 15 | 12 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 89.1892 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.3669 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.3669 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 43.4783 | 29.4118 | 83.3333 | 99.2780 | 5 | 12 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 60.0000 | 42.8571 | 100.0000 | 99.9796 | 9 | 12 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | hetalt | 64.7059 | 47.8261 | 100.0000 | 98.5430 | 11 | 12 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 84.6154 | 73.3333 | 100.0000 | 54.7945 | 33 | 12 | 33 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | * | 72.7273 | 57.1429 | 100.0000 | 97.4026 | 16 | 12 | 16 | 0 | 0 | ||