PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29451-29500 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | tech_badpromoters | * | 90.5660 | 84.7059 | 97.2973 | 51.6340 | 72 | 13 | 72 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.3173 | 97.2973 | 99.3590 | 56.7867 | 468 | 13 | 465 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | het | 92.5065 | 93.2292 | 91.7949 | 87.1287 | 179 | 13 | 179 | 16 | 2 | 12.5000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | * | 98.1894 | 98.1869 | 98.1919 | 88.2765 | 704 | 13 | 706 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.2984 | 98.2962 | 98.3007 | 88.8468 | 750 | 13 | 752 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | homalt | 96.5785 | 95.7929 | 97.3770 | 64.6991 | 296 | 13 | 297 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.3260 | 97.7233 | 98.9362 | 63.8924 | 558 | 13 | 558 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.1594 | 97.4952 | 98.8327 | 89.9117 | 506 | 13 | 508 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.2012 | 97.5518 | 98.8593 | 89.9733 | 518 | 13 | 520 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8463 | 99.7898 | 99.9029 | 55.0600 | 6171 | 13 | 6171 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3458 | 99.4510 | 99.2408 | 86.4188 | 2355 | 13 | 2353 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0344 | 98.9969 | 99.0719 | 86.7371 | 1283 | 13 | 1281 | 12 | 9 | 75.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6890 | 99.4621 | 99.9169 | 79.7698 | 2404 | 13 | 2406 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8882 | 99.8789 | 99.8975 | 38.7986 | 10719 | 13 | 10717 | 11 | 5 | 45.4545 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 90.6627 | 29 | 13 | 29 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9661 | 63.8889 | 100.0000 | 90.4959 | 23 | 13 | 23 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.6165 | 99.4147 | 99.8192 | 66.9456 | 2208 | 13 | 2208 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.1211 | 89.6000 | 99.1228 | 23.4899 | 112 | 13 | 113 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | homalt | 98.9405 | 98.9405 | 98.9405 | 82.3199 | 1214 | 13 | 1214 | 13 | 8 | 61.5385 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | * | 97.5703 | 97.4708 | 97.6699 | 99.3659 | 501 | 13 | 503 | 12 | 4 | 33.3333 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.9862 | 93.5323 | 94.4444 | 85.3550 | 188 | 13 | 187 | 11 | 5 | 45.4545 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8070 | 98.1869 | 99.4350 | 56.0248 | 704 | 13 | 704 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.7097 | 80.8824 | 98.2143 | 96.7098 | 55 | 13 | 55 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2174 | 92.0732 | 84.6715 | 84.6413 | 151 | 13 | 116 | 21 | 19 | 90.4762 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.4309 | 80.8824 | 100.0000 | 97.0478 | 55 | 13 | 55 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.6667 | 70.4545 | 100.0000 | 97.3368 | 31 | 13 | 31 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 89.6000 | 81.1594 | 100.0000 | 56.2500 | 56 | 13 | 56 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0506 | 97.8003 | 98.3022 | 82.9226 | 578 | 13 | 579 | 10 | 1 | 10.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | * | 97.7751 | 97.3790 | 98.1744 | 86.5042 | 483 | 13 | 484 | 9 | 2 | 22.2222 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | het | 97.7008 | 97.5096 | 97.8927 | 87.5328 | 509 | 13 | 511 | 11 | 2 | 18.1818 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6854 | 97.7431 | 99.6460 | 66.1879 | 563 | 13 | 563 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 86.2745 | 77.1930 | 97.7778 | 99.5198 | 44 | 13 | 44 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.6901 | 69.0476 | 100.0000 | 99.4796 | 29 | 13 | 29 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.8539 | 98.1508 | 99.5671 | 42.1053 | 690 | 13 | 690 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | * | 96.4567 | 94.9612 | 98.0000 | 83.4107 | 245 | 13 | 245 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | segdup | * | 95.4424 | 93.1937 | 97.8022 | 92.3817 | 178 | 13 | 178 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | het | 96.1457 | 95.6522 | 96.6443 | 87.6707 | 286 | 13 | 288 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | het | 96.2707 | 95.7929 | 96.7532 | 88.9129 | 296 | 13 | 298 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | het | 96.3650 | 95.8991 | 96.8354 | 89.0202 | 304 | 13 | 306 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5017 | 91.3907 | 100.0000 | 45.4887 | 138 | 13 | 145 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9393 | 99.8565 | 98.0388 | 61.8965 | 8348 | 12 | 8348 | 167 | 166 | 99.4012 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0301 | 97.2414 | 98.8318 | 65.5949 | 423 | 12 | 423 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9393 | 99.8565 | 98.0388 | 61.8965 | 8348 | 12 | 8348 | 167 | 166 | 99.4012 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | het | 97.6164 | 97.5104 | 97.7226 | 86.9141 | 470 | 12 | 472 | 11 | 2 | 18.1818 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | het | 97.7646 | 97.6654 | 97.8641 | 87.4604 | 502 | 12 | 504 | 11 | 2 | 18.1818 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 75.5694 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5000 | 86.0465 | 100.0000 | 77.2080 | 74 | 12 | 80 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | segdup | homalt | 99.9022 | 99.8883 | 99.9162 | 87.9114 | 10731 | 12 | 10731 | 9 | 9 | 100.0000 | |