PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29201-29250 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1185 | 98.1869 | 98.0501 | 57.4392 | 704 | 13 | 704 | 14 | 12 | 85.7143 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.1563 | 97.8654 | 90.7180 | 83.3187 | 596 | 13 | 518 | 53 | 40 | 75.4717 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 84.4221 | 86.5979 | 82.3529 | 95.1126 | 84 | 13 | 84 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 93.5776 | 98.9650 | 88.7464 | 88.5144 | 1243 | 13 | 1246 | 158 | 10 | 6.3291 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 93.6001 | 98.9748 | 88.7791 | 88.5873 | 1255 | 13 | 1258 | 159 | 10 | 6.2893 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 94.0601 | 98.8051 | 89.7500 | 89.3096 | 1075 | 13 | 1077 | 123 | 6 | 4.8781 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 92.8030 | 94.9612 | 90.7407 | 88.2660 | 245 | 13 | 245 | 25 | 3 | 12.0000 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | het | 98.7797 | 98.0451 | 99.5253 | 64.0909 | 652 | 13 | 629 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9540 | 90.2256 | 93.7500 | 86.9919 | 120 | 13 | 105 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1370 | 97.3361 | 96.9388 | 70.2670 | 475 | 13 | 475 | 15 | 11 | 73.3333 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.3016 | 80.8824 | 94.8276 | 96.4827 | 55 | 13 | 55 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 79.4872 | 70.4545 | 91.1765 | 96.6732 | 31 | 13 | 31 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1817 | 98.5900 | 99.7805 | 76.0326 | 909 | 13 | 909 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | het | 98.9959 | 99.4291 | 98.5665 | 80.1620 | 2264 | 13 | 2269 | 33 | 2 | 6.0606 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.9247 | 98.1508 | 99.7110 | 42.4771 | 690 | 13 | 690 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | * | 96.4567 | 94.9612 | 98.0000 | 85.8277 | 245 | 13 | 245 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7719 | 97.7431 | 99.8227 | 66.2275 | 563 | 13 | 563 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | * | 97.0986 | 95.0758 | 99.2095 | 85.1089 | 251 | 13 | 251 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5480 | 99.6325 | 99.4637 | 71.3697 | 3524 | 13 | 3524 | 19 | 19 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.9969 | 97.9969 | 97.9969 | 65.7700 | 636 | 13 | 636 | 13 | 13 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2346 | 98.7619 | 99.7118 | 60.6427 | 1037 | 13 | 1038 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5017 | 91.3907 | 100.0000 | 49.1228 | 138 | 13 | 145 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l150_m0_e0 | homalt | 99.5725 | 99.6821 | 99.4632 | 76.5815 | 4076 | 13 | 4076 | 22 | 7 | 31.8182 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7328 | 99.4670 | 100.0000 | 48.0069 | 2426 | 13 | 2426 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5869 | 99.1772 | 100.0000 | 48.3179 | 1567 | 13 | 1567 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8398 | 99.6802 | 100.0000 | 44.8107 | 4052 | 13 | 4052 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5111 | 99.0269 | 100.0000 | 52.7669 | 1323 | 13 | 1323 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2339 | 98.4795 | 100.0000 | 52.7497 | 842 | 13 | 842 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.5556 | 69.0476 | 96.6667 | 91.1504 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9661 | 63.8889 | 100.0000 | 90.5738 | 23 | 13 | 23 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | segdup | het | 92.0280 | 85.8696 | 99.1379 | 92.8439 | 79 | 13 | 115 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | het | 72.3404 | 56.6667 | 100.0000 | 88.3721 | 17 | 13 | 20 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e0 | het | 72.3404 | 56.6667 | 100.0000 | 90.0498 | 17 | 13 | 20 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | het | 72.3404 | 56.6667 | 100.0000 | 90.3382 | 17 | 13 | 20 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6440 | 99.4227 | 99.8662 | 57.6502 | 2239 | 13 | 2239 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | homalt | 98.7971 | 97.9332 | 99.6764 | 93.3875 | 616 | 13 | 616 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 64.2322 | 80.3030 | 53.5211 | 95.5261 | 53 | 13 | 38 | 33 | 1 | 3.0303 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | homalt | 99.8506 | 99.8328 | 99.8684 | 64.9624 | 7761 | 13 | 7590 | 10 | 5 | 50.0000 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | homalt | 99.8623 | 99.8226 | 99.9020 | 73.1001 | 7314 | 13 | 7136 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | homalt | 99.8676 | 99.8293 | 99.9058 | 75.1080 | 7603 | 13 | 7426 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | homalt | 99.8689 | 99.8310 | 99.9067 | 75.1753 | 7680 | 13 | 7499 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | homalt | 99.8200 | 99.7782 | 99.8619 | 70.0620 | 5847 | 13 | 5785 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | homalt | 99.8247 | 99.7839 | 99.8655 | 72.1762 | 6004 | 13 | 5941 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | homalt | 99.8263 | 99.7860 | 99.8666 | 72.2636 | 6061 | 13 | 5990 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | * | 98.7000 | 99.5089 | 97.9042 | 90.2532 | 2634 | 13 | 2616 | 56 | 6 | 10.7143 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | * | 98.7380 | 99.5489 | 97.9403 | 90.6578 | 2869 | 13 | 2853 | 60 | 6 | 10.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | * | 98.7186 | 99.5542 | 97.8969 | 90.7430 | 2903 | 13 | 2886 | 62 | 6 | 9.6774 | |
| eyeh-varpipe | SNP | tv | segdup | * | 97.0429 | 99.8476 | 94.3914 | 91.6933 | 8519 | 13 | 8398 | 499 | 11 | 2.2044 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.4440 | 85.0575 | 78.1250 | 99.8790 | 74 | 13 | 100 | 28 | 20 | 71.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.7953 | 74.0000 | 18.6528 | 60.2062 | 37 | 13 | 36 | 157 | 149 | 94.9045 | |