PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28751-28800 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D1_5 | segdup | * | 98.9561 | 98.7307 | 99.1826 | 95.3977 | 1089 | 14 | 1092 | 9 | 1 | 11.1111 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1002 | 98.6070 | 99.5984 | 66.0300 | 991 | 14 | 992 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5075 | 95.9538 | 99.1124 | 69.7674 | 332 | 14 | 335 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1674 | 98.6667 | 99.6732 | 58.9400 | 1036 | 14 | 1220 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | HG002compoundhet | het | 83.5162 | 93.2692 | 75.6098 | 84.8597 | 194 | 14 | 155 | 50 | 46 | 92.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.0370 | 77.0492 | 100.0000 | 56.0748 | 47 | 14 | 47 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.2975 | 98.9729 | 99.6243 | 77.9307 | 1349 | 14 | 1326 | 5 | 3 | 60.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0725 | 92.1348 | 98.2036 | 72.2591 | 164 | 14 | 164 | 3 | 3 | 100.0000 | |
| astatham-gatk | SNP | * | HG002compoundhet | homalt | 99.8748 | 99.8702 | 99.8794 | 34.8528 | 10768 | 14 | 10763 | 13 | 12 | 92.3077 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | homalt | 67.9183 | 93.2692 | 53.4031 | 79.4954 | 194 | 14 | 204 | 178 | 167 | 93.8202 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | * | 61.7886 | 57.5758 | 66.6667 | 85.3933 | 19 | 14 | 26 | 13 | 6 | 46.1538 | |
| anovak-vg | SNP | ti | tech_badpromoters | * | 89.2841 | 83.5294 | 95.8904 | 38.1356 | 71 | 14 | 70 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.1478 | 98.2188 | 98.0769 | 60.6061 | 772 | 14 | 765 | 15 | 10 | 66.6667 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6384 | 99.4387 | 99.8390 | 60.5902 | 2480 | 14 | 2480 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 79.7448 | 96.1003 | 68.1467 | 47.3577 | 345 | 14 | 353 | 165 | 141 | 85.4545 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.4647 | 88.7097 | 96.5517 | 99.9368 | 110 | 14 | 112 | 4 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | map_l125_m0_e0 | het | 90.1652 | 97.6150 | 83.7719 | 93.3586 | 573 | 14 | 573 | 111 | 27 | 24.3243 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | * | 81.2500 | 73.5849 | 90.6977 | 82.0084 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | * | 81.2500 | 73.5849 | 90.6977 | 84.4765 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | * | 81.2500 | 73.5849 | 90.6977 | 85.1724 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6666 | 99.3783 | 92.2222 | 67.1222 | 2238 | 14 | 2241 | 189 | 11 | 5.8201 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2893 | 99.6556 | 98.9258 | 48.4715 | 4051 | 14 | 4052 | 44 | 5 | 11.3636 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.6308 | 99.6416 | 93.7966 | 43.2141 | 3892 | 14 | 3901 | 258 | 11 | 4.2636 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.8789 | 99.0654 | 69.7740 | 90.1347 | 1484 | 14 | 1482 | 642 | 38 | 5.9190 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 44.1176 | 30.0000 | 83.3333 | 99.9060 | 6 | 14 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.2222 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.4026 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.5309 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | het | 10.5263 | 6.6667 | 25.0000 | 96.8992 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | het | 10.5263 | 6.6667 | 25.0000 | 97.2973 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | homalt | 94.2676 | 90.5405 | 98.3146 | 84.3310 | 134 | 14 | 175 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | het | 85.7414 | 98.1675 | 76.1076 | 89.6257 | 750 | 14 | 962 | 302 | 95 | 31.4570 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | het | 85.7424 | 98.1818 | 76.1006 | 89.7593 | 756 | 14 | 968 | 304 | 95 | 31.2500 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.0929 | 41.6667 | 56.8627 | 26.6187 | 10 | 14 | 58 | 44 | 40 | 90.9091 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m1_e0 | homalt | 61.5385 | 46.1538 | 92.3077 | 85.2273 | 12 | 14 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | * | 57.3585 | 57.5758 | 57.1429 | 81.9063 | 19 | 14 | 64 | 48 | 36 | 75.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | tech_badpromoters | homalt | 90.4110 | 82.5000 | 100.0000 | 44.9153 | 66 | 14 | 65 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | * | 94.5123 | 95.1557 | 93.8776 | 90.9427 | 275 | 14 | 276 | 18 | 5 | 27.7778 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | * | 79.6826 | 70.2128 | 92.1053 | 89.7849 | 33 | 14 | 35 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | het | 85.4139 | 78.1250 | 94.2029 | 79.5252 | 50 | 14 | 65 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 59.3672 | 76.6667 | 48.4375 | 84.0000 | 46 | 14 | 31 | 33 | 11 | 33.3333 | |