PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28601-28650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | het | 34.9515 | 22.2222 | 81.8182 | 64.5161 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | het | 34.9515 | 22.2222 | 81.8182 | 68.5714 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | het | 34.9515 | 22.2222 | 81.8182 | 68.5714 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | hetalt | 22.2222 | 12.5000 | 100.0000 | 75.0000 | 2 | 14 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | segdup | het | 53.1401 | 41.6667 | 73.3333 | 84.5361 | 10 | 14 | 11 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.7316 | 95.9538 | 91.6100 | 65.6542 | 332 | 14 | 404 | 37 | 20 | 54.0541 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | het | 97.4137 | 97.1831 | 97.6454 | 84.4497 | 483 | 14 | 705 | 17 | 10 | 58.8235 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | het | 97.2633 | 97.2441 | 97.2826 | 84.5216 | 494 | 14 | 716 | 20 | 12 | 60.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6695 | 97.3025 | 98.0392 | 88.0317 | 505 | 14 | 800 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | * | 97.7120 | 97.3635 | 98.0630 | 88.1407 | 517 | 14 | 810 | 16 | 10 | 62.5000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6007 | 99.4924 | 99.7093 | 41.1337 | 2744 | 14 | 2744 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.5686 | 93.3649 | 100.0000 | 48.0211 | 197 | 14 | 197 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 84.0909 | 72.5490 | 100.0000 | 39.3443 | 37 | 14 | 37 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 74.0849 | 62.1622 | 91.6667 | 93.6508 | 23 | 14 | 22 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.1268 | 69.5652 | 97.2973 | 43.0769 | 32 | 14 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4084 | 97.8691 | 98.9537 | 78.0007 | 643 | 14 | 662 | 7 | 3 | 42.8571 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 36.3636 | 22.2222 | 100.0000 | 90.0000 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.0563 | 65.8537 | 90.0000 | 61.0390 | 27 | 14 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | het | 36.3636 | 22.2222 | 100.0000 | 80.0000 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | het | 36.3636 | 22.2222 | 100.0000 | 81.8182 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e1 | het | 36.3636 | 22.2222 | 100.0000 | 82.6087 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | segdup | het | 55.8376 | 41.6667 | 84.6154 | 86.8687 | 10 | 14 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | * | 97.0470 | 95.4839 | 98.6622 | 88.2791 | 296 | 14 | 295 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | het | 95.9569 | 92.7083 | 99.4413 | 88.6493 | 178 | 14 | 178 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 85.6957 | 76.2712 | 97.7778 | 48.8636 | 45 | 14 | 44 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | * | 83.8710 | 73.5849 | 97.5000 | 86.4865 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e0 | * | 83.8710 | 73.5849 | 97.5000 | 88.4058 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | * | 83.8710 | 73.5849 | 97.5000 | 88.7955 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8486 | 99.6390 | 98.0706 | 65.3592 | 3864 | 14 | 3863 | 76 | 10 | 13.1579 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2360 | 99.6967 | 98.7794 | 42.1600 | 4602 | 14 | 4613 | 57 | 9 | 15.7895 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7130 | 99.7766 | 99.6495 | 46.4322 | 6254 | 14 | 6254 | 22 | 9 | 40.9091 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6527 | 99.7736 | 99.5322 | 54.5761 | 6170 | 14 | 6170 | 29 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9120 | 99.0753 | 98.7492 | 88.2866 | 1500 | 14 | 1500 | 19 | 8 | 42.1053 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7828 | 99.7106 | 99.8551 | 69.0939 | 4823 | 14 | 4823 | 7 | 4 | 57.1429 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0852 | 99.0155 | 99.1549 | 88.3559 | 1408 | 14 | 1408 | 12 | 6 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | het | 94.0273 | 97.6150 | 90.6940 | 93.8779 | 573 | 14 | 575 | 59 | 2 | 3.3898 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | * | 92.6752 | 95.4098 | 90.0929 | 97.2306 | 291 | 14 | 291 | 32 | 4 | 12.5000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | * | 93.2353 | 95.7704 | 90.8309 | 97.3828 | 317 | 14 | 317 | 32 | 4 | 12.5000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | * | 93.2749 | 95.7958 | 90.8832 | 97.4381 | 319 | 14 | 319 | 32 | 4 | 12.5000 | |
| jmaeng-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.8538 | 99.8679 | 99.8397 | 60.1891 | 10584 | 14 | 10591 | 17 | 15 | 88.2353 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.7097 | 79.7101 | 100.0000 | 53.3898 | 55 | 14 | 55 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 95.1391 | 98.0474 | 92.3984 | 92.1292 | 703 | 14 | 705 | 58 | 5 | 8.6207 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 95.3628 | 98.1651 | 92.7160 | 92.5428 | 749 | 14 | 751 | 59 | 5 | 8.4746 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3640 | 99.1541 | 99.5747 | 61.1334 | 1641 | 14 | 1639 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 95.9559 | 94.9091 | 97.0260 | 89.6974 | 261 | 14 | 261 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.0244 | 83.9080 | 94.8052 | 84.8425 | 73 | 14 | 73 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.3674 | 89.4737 | 95.4545 | 87.9781 | 119 | 14 | 105 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.8366 | 99.8959 | 99.7773 | 52.9712 | 13434 | 14 | 13440 | 30 | 28 | 93.3333 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.9996 | 94.3320 | 97.7273 | 81.2766 | 233 | 14 | 215 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8081 | 99.6424 | 99.9744 | 76.1009 | 3901 | 14 | 3901 | 1 | 1 | 100.0000 | |