PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28251-28300 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 97.2875 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0635 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0635 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | HG002compoundhet | homalt | 99.1913 | 99.5573 | 98.8280 | 47.3709 | 3373 | 15 | 3373 | 40 | 33 | 82.5000 | |
| gduggal-bwafb | SNP | tv | segdup | homalt | 99.6445 | 99.5368 | 99.7524 | 90.8111 | 3223 | 15 | 3223 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 11.7647 | 6.2500 | 100.0000 | 99.9953 | 1 | 15 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | homalt | 70.5882 | 54.5455 | 100.0000 | 70.0000 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.7737 | 94.2085 | 72.2388 | 51.3788 | 244 | 15 | 242 | 93 | 93 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.5224 | 99.6844 | 91.6941 | 50.1544 | 4738 | 15 | 4736 | 429 | 428 | 99.7669 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 79.4045 | 68.0851 | 95.2381 | 93.5385 | 32 | 15 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 79.9308 | 68.7500 | 95.4545 | 93.6047 | 33 | 15 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | * | 99.0456 | 98.6401 | 99.4545 | 94.8352 | 1088 | 15 | 1094 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8166 | 94.3609 | 97.3180 | 80.3612 | 251 | 15 | 254 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 79.3672 | 73.6842 | 86.0000 | 99.4308 | 42 | 15 | 43 | 7 | 4 | 57.1429 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.3657 | 84.5361 | 97.0588 | 20.9302 | 82 | 15 | 33 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | het | 92.5000 | 88.0952 | 97.3684 | 82.6879 | 111 | 15 | 148 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.2401 | 97.2678 | 97.2125 | 76.6096 | 534 | 15 | 558 | 16 | 13 | 81.2500 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6794 | 99.6260 | 97.7506 | 58.4645 | 3996 | 15 | 3998 | 92 | 11 | 11.9565 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.8922 | 93.2127 | 64.0000 | 92.1573 | 206 | 15 | 208 | 117 | 11 | 9.4017 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7826 | 85.1485 | 66.6667 | 94.5791 | 86 | 15 | 82 | 41 | 9 | 21.9512 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | * | 97.6949 | 97.9079 | 97.4828 | 88.4422 | 702 | 15 | 852 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8351 | 98.0341 | 97.6369 | 88.8302 | 748 | 15 | 909 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 84.7659 | 96.9199 | 75.3205 | 52.5114 | 472 | 15 | 470 | 154 | 152 | 98.7013 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 69.2308 | 54.5455 | 94.7368 | 83.3333 | 18 | 15 | 36 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | homalt | 70.3704 | 55.8824 | 95.0000 | 90.0990 | 19 | 15 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | het | 92.5331 | 98.8057 | 87.0093 | 88.9275 | 1241 | 15 | 1219 | 182 | 48 | 26.3736 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | het | 92.4908 | 98.8170 | 86.9258 | 89.0233 | 1253 | 15 | 1230 | 185 | 49 | 26.4865 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 97.5113 | 95.7020 | 99.3902 | 79.6400 | 334 | 15 | 326 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 97.6160 | 95.8791 | 99.4169 | 80.7412 | 349 | 15 | 341 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 59.4595 | 59.4595 | 59.4595 | 84.3882 | 22 | 15 | 22 | 15 | 6 | 40.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 11.1111 | 6.2500 | 50.0000 | 90.4762 | 1 | 15 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 98.3607 | 0 | 15 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 98.6301 | 0 | 15 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 98.7179 | 0 | 15 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I6_15 | func_cds | het | 52.9412 | 37.5000 | 90.0000 | 41.1765 | 9 | 15 | 9 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | homalt | 99.4590 | 99.3246 | 99.5937 | 66.7118 | 2206 | 15 | 2206 | 9 | 7 | 77.7778 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | het | 94.5578 | 98.5309 | 90.8927 | 91.4725 | 1006 | 15 | 1008 | 101 | 5 | 4.9505 | |
| ckim-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 93.5622 | 87.9032 | 100.0000 | 86.7947 | 109 | 15 | 110 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6970 | 99.9315 | 99.4637 | 76.0277 | 21884 | 15 | 21884 | 118 | 117 | 99.1525 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | hetalt | 72.0000 | 64.2857 | 81.8182 | 76.5957 | 27 | 15 | 27 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 73.3002 | 96.8017 | 58.9809 | 87.2316 | 454 | 15 | 463 | 322 | 72 | 22.3602 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | tv | map_l100_m2_e0 | hetalt | 72.0000 | 64.2857 | 81.8182 | 76.5957 | 27 | 15 | 27 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |