PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28151-28200 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | homalt | 99.8435 | 99.7530 | 99.9341 | 68.3791 | 6059 | 15 | 6065 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.2109 | 98.7310 | 88.2753 | 60.4783 | 1167 | 15 | 1167 | 155 | 153 | 98.7097 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | homalt | 98.8581 | 98.7775 | 98.9388 | 83.8582 | 1212 | 15 | 1212 | 13 | 7 | 53.8462 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | homalt | 98.8497 | 98.8105 | 98.8889 | 84.7844 | 1246 | 15 | 1246 | 14 | 7 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | homalt | 98.8676 | 98.8290 | 98.9062 | 84.8287 | 1266 | 15 | 1266 | 14 | 7 | 50.0000 | |
| jmaeng-gatk | INDEL | * | segdup | het | 94.5277 | 98.9768 | 90.4613 | 96.5263 | 1451 | 15 | 1451 | 153 | 2 | 1.3072 | |
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | homalt | 85.9772 | 77.6119 | 96.3636 | 94.7267 | 52 | 15 | 53 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 97.7444 | 0 | 15 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | het | 10.0000 | 6.2500 | 25.0000 | 97.4026 | 1 | 15 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | het | 84.5932 | 97.4619 | 74.7264 | 88.6901 | 576 | 15 | 751 | 254 | 66 | 25.9843 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | hetalt | 0.0000 | 71.1538 | 0.0000 | 0.0000 | 37 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | homalt | 62.0102 | 46.4286 | 93.3333 | 84.5361 | 13 | 15 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 38.3333 | 68.7500 | 0 | 15 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | * | 89.9579 | 95.1613 | 85.2941 | 90.0943 | 295 | 15 | 493 | 85 | 27 | 31.7647 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 67.7557 | 87.7049 | 55.2000 | 61.5975 | 107 | 15 | 138 | 112 | 75 | 66.9643 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | segdup | homalt | 80.0000 | 68.0851 | 96.9697 | 90.5444 | 32 | 15 | 32 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 15.4909 | 90.1316 | 8.4736 | 78.2178 | 137 | 15 | 151 | 1631 | 23 | 1.4102 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.1142 | 85.1485 | 8.2932 | 83.7435 | 86 | 15 | 86 | 951 | 14 | 1.4721 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 72.2413 | 99.3100 | 56.7681 | 68.0924 | 2159 | 15 | 2164 | 1648 | 10 | 0.6068 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.2298 | 81.7073 | 84.8101 | 93.6342 | 67 | 15 | 67 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.1970 | 96.8085 | 86.2004 | 69.9943 | 455 | 15 | 456 | 73 | 58 | 79.4521 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.3870 | 99.3850 | 93.5645 | 65.8553 | 2424 | 15 | 2428 | 167 | 12 | 7.1856 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.2105 | 99.3947 | 97.0542 | 49.5042 | 2463 | 15 | 2471 | 75 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | func_cds | * | 99.2142 | 99.6568 | 98.7755 | 38.2266 | 4356 | 15 | 4356 | 54 | 5 | 9.2593 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5544 | 99.2984 | 99.8118 | 74.6933 | 2123 | 15 | 2121 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 18 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | het | 78.9308 | 95.6012 | 67.2109 | 93.3460 | 326 | 15 | 494 | 241 | 48 | 19.9170 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | homalt | 92.0987 | 86.9565 | 97.8873 | 93.0221 | 100 | 15 | 139 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e1 | homalt | 92.1748 | 87.0690 | 97.9167 | 93.1133 | 101 | 15 | 141 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 15 | 0 | 0 | 0 | ||||