PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27801-27850 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | tv | map_l125_m1_e0 | homalt | 99.7525 | 99.7270 | 99.7780 | 67.2958 | 5844 | 16 | 5844 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | homalt | 99.7590 | 99.7341 | 99.7838 | 69.7058 | 6001 | 16 | 6001 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | homalt | 99.7612 | 99.7366 | 99.7859 | 69.7479 | 6058 | 16 | 6058 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.7817 | 749 | 16 | 749 | 16 | 3 | 18.7500 | |
| hfeng-pmm3 | SNP | tv | segdup | het | 99.6218 | 99.6974 | 99.5464 | 90.8847 | 5271 | 16 | 5267 | 24 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8937 | 99.8584 | 99.9291 | 56.1359 | 11280 | 16 | 11280 | 8 | 7 | 87.5000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 45.6361 | 81.6092 | 31.6742 | 99.7077 | 71 | 16 | 70 | 151 | 4 | 2.6490 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 92.7075 | 87.0968 | 99.0909 | 87.3418 | 108 | 16 | 109 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | homalt | 98.7765 | 98.6960 | 98.8571 | 82.9030 | 1211 | 16 | 1211 | 14 | 6 | 42.8571 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 92.7695 | 87.2000 | 99.0991 | 88.2788 | 109 | 16 | 110 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.3938 | 98.5294 | 98.2585 | 65.1438 | 1072 | 16 | 1072 | 19 | 14 | 73.6842 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.7235 | 99.7792 | 97.6898 | 36.3761 | 7231 | 16 | 7231 | 171 | 170 | 99.4152 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9066 | 99.8428 | 99.9705 | 54.1001 | 10162 | 16 | 10162 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.1705 | 99.5602 | 96.8190 | 57.4112 | 3622 | 16 | 3622 | 119 | 117 | 98.3193 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 92.3351 | 94.1818 | 90.5594 | 88.7090 | 259 | 16 | 259 | 27 | 5 | 18.5185 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9161 | 93.4959 | 96.3801 | 87.9826 | 230 | 16 | 213 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8334 | 96.0100 | 99.7275 | 78.6876 | 385 | 16 | 366 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0230 | 99.5751 | 98.4769 | 55.3942 | 3750 | 16 | 3750 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8127 | 99.4294 | 98.2036 | 48.6526 | 2788 | 16 | 2788 | 51 | 50 | 98.0392 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9318 | 99.4945 | 98.3755 | 50.6856 | 3149 | 16 | 3149 | 52 | 50 | 96.1538 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0230 | 99.5751 | 98.4769 | 55.3942 | 3750 | 16 | 3750 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m1_e0 | * | 98.8805 | 98.8051 | 98.9560 | 83.1786 | 1323 | 16 | 1327 | 14 | 4 | 28.5714 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9042 | 98.8304 | 98.9781 | 84.3732 | 1352 | 16 | 1356 | 14 | 4 | 28.5714 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9254 | 98.8530 | 98.9979 | 84.4605 | 1379 | 16 | 1383 | 14 | 4 | 28.5714 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | * | 96.6555 | 94.7541 | 98.6348 | 83.9364 | 289 | 16 | 289 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5273 | 99.6634 | 99.3915 | 39.2247 | 4737 | 16 | 4737 | 29 | 28 | 96.5517 | |
| hfeng-pmm3 | INDEL | D6_15 | map_siren | * | 98.1089 | 96.8566 | 99.3939 | 82.2134 | 493 | 16 | 492 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | map_l125_m0_e0 | homalt | 99.6659 | 99.6437 | 99.6881 | 69.8765 | 4475 | 16 | 4475 | 14 | 5 | 35.7143 | |
| hfeng-pmm3 | SNP | ti | map_l250_m0_e0 | het | 98.2343 | 98.2869 | 98.1818 | 93.2251 | 918 | 16 | 918 | 17 | 1 | 5.8824 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4278 | 98.9873 | 99.8723 | 47.9734 | 1564 | 16 | 1564 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | het | 97.6596 | 98.2869 | 97.0402 | 94.0240 | 918 | 16 | 918 | 28 | 3 | 10.7143 | |
| hfeng-pmm2 | SNP | tv | segdup | * | 99.6780 | 99.8125 | 99.5439 | 91.3819 | 8516 | 16 | 8512 | 39 | 4 | 10.2564 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.4820 | 97.0093 | 100.0000 | 73.5592 | 519 | 16 | 523 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7447 | 99.7365 | 99.7529 | 55.2418 | 6056 | 16 | 6056 | 15 | 15 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | hetalt | 93.5484 | 87.8788 | 100.0000 | 87.1739 | 116 | 16 | 118 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | * | 95.6954 | 94.7541 | 96.6555 | 94.7800 | 289 | 16 | 289 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | * | 96.0366 | 95.1662 | 96.9231 | 95.1304 | 315 | 16 | 315 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | * | 96.0606 | 95.1952 | 96.9419 | 95.2325 | 317 | 16 | 317 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | * | segdup | het | 98.8075 | 98.9086 | 98.7066 | 94.4130 | 1450 | 16 | 1450 | 19 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | * | homalt | 99.2597 | 99.0544 | 99.4659 | 65.7799 | 1676 | 16 | 1676 | 9 | 4 | 44.4444 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.4189 | 97.8723 | 96.9697 | 59.4335 | 736 | 16 | 736 | 23 | 23 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.8604 | 96.7742 | 98.9712 | 84.7887 | 480 | 16 | 481 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6837 | 98.6418 | 98.7256 | 72.6343 | 1162 | 16 | 1162 | 15 | 15 | 100.0000 | |
| jlack-gatk | SNP | * | HG002compoundhet | homalt | 99.8516 | 99.8516 | 99.8515 | 34.5857 | 10766 | 16 | 10761 | 16 | 15 | 93.7500 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8910 | 99.8415 | 99.9405 | 60.8743 | 10081 | 16 | 10081 | 6 | 6 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6822 | 99.5584 | 99.8063 | 74.0988 | 3607 | 16 | 3607 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | het | 97.6068 | 97.2743 | 97.9417 | 88.6222 | 571 | 16 | 571 | 12 | 2 | 16.6667 | |
| jli-custom | INDEL | * | segdup | het | 99.1785 | 98.9086 | 99.4498 | 94.3865 | 1450 | 16 | 1446 | 8 | 1 | 12.5000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 55.5556 | 38.4615 | 100.0000 | 83.9286 | 10 | 16 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 55.5556 | 38.4615 | 100.0000 | 83.3333 | 10 | 16 | 10 | 0 | 0 | ||