PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27751-27800 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 95.3690 | 95.3623 | 95.3757 | 89.7329 | 329 | 16 | 330 | 16 | 1 | 6.2500 | |
| astatham-gatk | INDEL | D6_15 | map_siren | * | 97.2363 | 96.8566 | 97.6190 | 85.4503 | 493 | 16 | 492 | 12 | 2 | 16.6667 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6042 | 99.3980 | 99.8112 | 69.7820 | 2642 | 16 | 2643 | 5 | 3 | 60.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5649 | 94.0520 | 99.2157 | 76.9231 | 253 | 16 | 253 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5855 | 99.3980 | 99.7736 | 69.6866 | 2642 | 16 | 2644 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.7495 | 94.0520 | 99.6063 | 76.6972 | 253 | 16 | 253 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4606 | 91.0112 | 98.1818 | 72.4541 | 162 | 16 | 162 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9156 | 99.9069 | 99.9243 | 55.5895 | 17161 | 16 | 17157 | 13 | 8 | 61.5385 | |
| bgallagher-sentieon | SNP | tv | HG002compoundhet | het | 99.6043 | 99.6576 | 99.5511 | 55.0192 | 4657 | 16 | 4657 | 21 | 5 | 23.8095 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7013 | 99.6705 | 99.7321 | 66.3966 | 4840 | 16 | 4840 | 13 | 10 | 76.9231 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.5036 | 99.2796 | 99.7286 | 68.6827 | 2205 | 16 | 2205 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | segdup | * | 99.4858 | 99.8125 | 99.1612 | 91.3387 | 8516 | 16 | 8512 | 72 | 6 | 8.3333 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.2405 | 95.8549 | 98.6667 | 91.1368 | 370 | 16 | 370 | 5 | 3 | 60.0000 | |
| astatham-gatk | SNP | ti | segdup | homalt | 99.8666 | 99.7868 | 99.9466 | 87.4281 | 7489 | 16 | 7489 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | homalt | 92.0930 | 86.0870 | 99.0000 | 95.9920 | 99 | 16 | 99 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | homalt | 92.1659 | 86.2069 | 99.0099 | 96.0531 | 100 | 16 | 100 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.8376 | 96.7213 | 94.9698 | 72.2501 | 472 | 16 | 472 | 25 | 21 | 84.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5262 | 96.9639 | 94.1304 | 83.3091 | 511 | 16 | 433 | 27 | 27 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.6459 | 92.4171 | 96.9849 | 47.4934 | 195 | 16 | 193 | 6 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | homalt | 82.8729 | 75.0000 | 92.5926 | 84.7025 | 48 | 16 | 50 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.1614 | 75.3846 | 92.7273 | 85.4111 | 49 | 16 | 51 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.6260 | 99.6141 | 99.6379 | 82.9126 | 4130 | 16 | 4128 | 15 | 8 | 53.3333 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7694 | 99.7050 | 99.8338 | 75.7174 | 5407 | 16 | 5407 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.6705 | 99.6705 | 99.6705 | 66.2895 | 4840 | 16 | 4840 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.7076 | 97.2927 | 98.1261 | 84.3425 | 575 | 16 | 576 | 11 | 2 | 18.1818 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.6528 | 90.4762 | 94.9367 | 73.7977 | 152 | 16 | 150 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6989 | 94.3463 | 97.0909 | 72.3061 | 267 | 16 | 267 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.1200 | 97.1631 | 99.0958 | 72.4464 | 548 | 16 | 548 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9799 | 98.8355 | 99.1247 | 71.3838 | 1358 | 16 | 1359 | 12 | 9 | 75.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.9305 | 94.9367 | 99.0099 | 74.3003 | 300 | 16 | 300 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.0644 | 96.7807 | 99.3827 | 86.9285 | 481 | 16 | 483 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.1069 | 96.8504 | 99.3964 | 86.9861 | 492 | 16 | 494 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7694 | 99.7050 | 99.8338 | 75.7174 | 5407 | 16 | 5407 | 9 | 2 | 22.2222 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.3423 | 93.5223 | 99.3377 | 47.4478 | 231 | 16 | 450 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9992 | 98.4080 | 99.5976 | 63.6430 | 989 | 16 | 990 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1039 | 94.1818 | 98.1061 | 83.8433 | 259 | 16 | 259 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.2069 | 75.7576 | 100.0000 | 94.2661 | 50 | 16 | 50 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.4375 | 99.0044 | 99.8745 | 84.1493 | 1591 | 16 | 1591 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | homalt | 99.4834 | 99.0852 | 99.8847 | 85.3537 | 1733 | 16 | 1733 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.4901 | 99.0971 | 99.8862 | 85.3999 | 1756 | 16 | 1756 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.6079 | 98.0723 | 99.1495 | 84.7395 | 814 | 16 | 816 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | het | 97.9184 | 96.7078 | 99.1597 | 85.5451 | 470 | 16 | 472 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.9134 | 99.8615 | 99.9653 | 69.5900 | 11536 | 16 | 11536 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.9134 | 99.8615 | 99.9653 | 69.5900 | 11536 | 16 | 11536 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8642 | 99.7447 | 99.9840 | 43.8336 | 6252 | 16 | 6252 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3976 | 98.8024 | 100.0000 | 50.1134 | 1320 | 16 | 1320 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0555 | 98.1287 | 100.0000 | 47.6606 | 839 | 16 | 839 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.9009 | 749 | 16 | 749 | 16 | 4 | 25.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.7052 | 92.7928 | 96.6981 | 61.0294 | 206 | 16 | 205 | 7 | 5 | 71.4286 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e1 | het | 97.3802 | 98.2684 | 96.5079 | 91.0427 | 908 | 16 | 912 | 33 | 3 | 9.0909 | |