PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27501-27550 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 50.2079 | 86.2903 | 35.4037 | 86.0546 | 107 | 17 | 114 | 208 | 3 | 1.4423 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | * | 91.8033 | 89.1720 | 94.5946 | 70.5179 | 140 | 17 | 140 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.1905 | 52.7778 | 27.5362 | 94.7767 | 19 | 17 | 19 | 50 | 3 | 6.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 54.0541 | 0.0000 | 0.0000 | 20 | 17 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 17 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | HG002compoundhet | homalt | 5.2905 | 29.1667 | 2.9091 | 54.3189 | 7 | 17 | 8 | 267 | 226 | 84.6442 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.3333 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.5294 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | homalt | 56.4103 | 39.2857 | 100.0000 | 94.2149 | 11 | 17 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 17 | 0 | 6 | 0 | 0.0000 | ||
| ghariani-varprowl | INDEL | * | tech_badpromoters | * | 78.6667 | 77.6316 | 79.7297 | 67.6856 | 59 | 17 | 59 | 15 | 15 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | homalt | 94.8819 | 93.4109 | 96.4000 | 79.4069 | 241 | 17 | 241 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | * | 90.8918 | 96.5726 | 85.8423 | 90.8419 | 479 | 17 | 479 | 79 | 10 | 12.6582 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.8315 | 92.5439 | 97.2350 | 84.8569 | 211 | 17 | 211 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_siren | het | 93.3499 | 99.2534 | 88.1092 | 86.6204 | 2260 | 17 | 2260 | 305 | 111 | 36.3934 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 79.2084 | 99.3671 | 65.8495 | 73.6859 | 2669 | 17 | 2713 | 1407 | 18 | 1.2793 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | hetalt | 30.3797 | 19.0476 | 75.0000 | 99.4778 | 4 | 17 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e0 | hetalt | 30.3797 | 19.0476 | 75.0000 | 99.5338 | 4 | 17 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | het | 73.2968 | 67.9245 | 79.5918 | 99.0360 | 36 | 17 | 39 | 10 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 11.7728 | 84.3137 | 6.3282 | 78.4662 | 86 | 16 | 86 | 1273 | 9 | 0.7070 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.0378 | 96.3964 | 51.3872 | 89.5473 | 428 | 16 | 426 | 403 | 27 | 6.6998 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 16 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_siren | homalt | 37.0370 | 23.8095 | 83.3333 | 89.6552 | 5 | 16 | 5 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.2728 | 88.8112 | 66.8367 | 94.9485 | 127 | 16 | 131 | 65 | 9 | 13.8462 | |
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6463 | 99.5904 | 97.7199 | 44.7612 | 3890 | 16 | 3900 | 91 | 9 | 9.8901 | |
| ghariani-varprowl | SNP | tv | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | het | 88.7470 | 97.2028 | 81.6446 | 94.8874 | 556 | 16 | 556 | 125 | 12 | 9.6000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | het | 96.5886 | 95.3079 | 97.9042 | 90.5060 | 325 | 16 | 327 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | het | 90.8046 | 97.6879 | 84.8276 | 95.5414 | 676 | 16 | 861 | 154 | 123 | 79.8701 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | homalt | 60.5657 | 44.8276 | 93.3333 | 84.5361 | 13 | 16 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 16 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 44.4444 | 57.1429 | 0 | 16 | 12 | 15 | 5 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | het | 18.9474 | 11.1111 | 64.2857 | 75.6522 | 2 | 16 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | het | 19.0000 | 11.1111 | 65.5172 | 77.3438 | 2 | 16 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e1 | het | 19.0000 | 11.1111 | 65.5172 | 77.8626 | 2 | 16 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 44.5230 | 36.0000 | 58.3333 | 84.0000 | 9 | 16 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 30.4348 | 0.0000 | 0.0000 | 7 | 16 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | homalt | 95.2577 | 92.3077 | 98.4026 | 77.2032 | 192 | 16 | 308 | 5 | 2 | 40.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.9524 | 40.7407 | 14.1026 | 96.9614 | 11 | 16 | 11 | 67 | 1 | 1.4925 | |
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | het | 85.1770 | 77.4648 | 94.5946 | 79.8365 | 55 | 16 | 70 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | het | 85.1770 | 77.4648 | 94.5946 | 79.9458 | 55 | 16 | 70 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||